| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is ygfF [H]
Identifier: 116620858
GI number: 116620858
Start: 2160337
End: 2161071
Strand: Direct
Name: ygfF [H]
Synonym: Acid_1739
Alternate gene names: 116620858
Gene position: 2160337-2161071 (Clockwise)
Preceding gene: 116620856
Following gene: 116620859
Centisome position: 21.68
GC content: 68.84
Gene sequence:
>735_bases ATGATCGTGACCGGCGGCGGGCGAGGGATCGGCGCCTGCACGGCGCGGTTGGCGGGCGCGCGCGGATATGCGGTCGGCGT CAACTACCTGCGCGATCGCGACGCTGCGGCGGGCGTGGCGGATTCCATCGAGCAGGCCGGCGGCAACGCAATCGCGGTGC AGGCCGATATCGGAGTGGAAGCCGACGTCCTCCGCCTGTTCGAGACGGTGGAGAAAGAGTTGGGACGGCCGGCGGCGCTG GTGAACAACGCAGCTCGGTTGGAGCAGCAGATGCGTTTGGAAGCGATGGACCCGGCACGGCTGCACCGGATGTTCGCGAC CAACGCGGTGGGCACGATGCTCTGTTCGCGGGAGGCGGTGCGCCGCATGTCCCGGCGCCGCGGAGGCGAGGGCGGAGCGA TCGTGAACGTGTCCTCGGGCGCGGCGCGCTACGGCTCGCCGGGCGAGTATGTGGACTACGCGGCGACCAAGGGCGCGGTG GAGACGTTCACAGTCGGACTGGCCCGCGAGGTCGCCGAAGAAGGAATTCGCGTCAACGGCGTGAGGCCGGGTTTCATCTA TACGGAAATGCACGCCGCGGGCGGAGAGCCGGGGCGGGTGGATCGCGTGAAGTCGCTGGTGCCGATGCAGCGCGGCGGCC AACCGGAAGAAGTGGCGTCGGCGATTCTCTGGCTGCTCTCCGACGAGGCGTCGTACGTAACGGGCACGTTTATCGATGTG GCGGGTGGGCGTTAG
Upstream 100 bases:
>100_bases ATGTTCACCGACTCTATCCAAAGAGCCCCCACACTCGCAATAGCCGGTGTGTGCGATCGAGCACCCGCCGATGTAAAGTC GAGGGATGGAGCCGAAGGTG
Downstream 100 bases:
>100_bases TAAAAAGGGGTATAAATAGCAGGAGCTAGATGTACATACGGGTTAATGATCAGGACAACGTCGGGATTATTGTGGAGCCG GAGGGAGTCGTCACGGCGCG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MIVTGGGRGIGACTARLAGARGYAVGVNYLRDRDAAAGVADSIEQAGGNAIAVQADIGVEADVLRLFETVEKELGRPAAL VNNAARLEQQMRLEAMDPARLHRMFATNAVGTMLCSREAVRRMSRRRGGEGGAIVNVSSGAARYGSPGEYVDYAATKGAV ETFTVGLAREVAEEGIRVNGVRPGFIYTEMHAAGGEPGRVDRVKSLVPMQRGGQPEEVASAILWLLSDEASYVTGTFIDV AGGR
Sequences:
>Translated_244_residues MIVTGGGRGIGACTARLAGARGYAVGVNYLRDRDAAAGVADSIEQAGGNAIAVQADIGVEADVLRLFETVEKELGRPAAL VNNAARLEQQMRLEAMDPARLHRMFATNAVGTMLCSREAVRRMSRRRGGEGGAIVNVSSGAARYGSPGEYVDYAATKGAV ETFTVGLAREVAEEGIRVNGVRPGFIYTEMHAAGGEPGRVDRVKSLVPMQRGGQPEEVASAILWLLSDEASYVTGTFIDV AGGR >Mature_244_residues MIVTGGGRGIGACTARLAGARGYAVGVNYLRDRDAAAGVADSIEQAGGNAIAVQADIGVEADVLRLFETVEKELGRPAAL VNNAARLEQQMRLEAMDPARLHRMFATNAVGTMLCSREAVRRMSRRRGGEGGAIVNVSSGAARYGSPGEYVDYAATKGAV ETFTVGLAREVAEEGIRVNGVRPGFIYTEMHAAGGEPGRVDRVKSLVPMQRGGQPEEVASAILWLLSDEASYVTGTFIDV AGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=39.2712550607287, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=36.5079365079365, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=33.7349397590361, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI59889578, Length=217, Percent_Identity=32.258064516129, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=30.5555555555556, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=30.0411522633745, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI109715829, Length=245, Percent_Identity=28.9795918367347, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=28.968253968254, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI31542939, Length=241, Percent_Identity=25.7261410788382, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=61.3168724279835, Blast_Score=297, Evalue=4e-82, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=32.6530612244898, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=32.9218106995885, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=33.0578512396694, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=28.6885245901639, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=31.5789473684211, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=34.0163934426229, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=31.25, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=31.0756972111554, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=29.2490118577075, Blast_Score=73, Evalue=1e-14, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=27.5303643724696, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=27.1255060728745, Blast_Score=60, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17555706, Length=242, Percent_Identity=37.603305785124, Blast_Score=118, Evalue=2e-27, Organism=Caenorhabditis elegans, GI25147288, Length=242, Percent_Identity=33.4710743801653, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17536025, Length=248, Percent_Identity=31.8548387096774, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=31.7269076305221, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17561272, Length=225, Percent_Identity=32.8888888888889, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=29.2682926829268, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71994600, Length=263, Percent_Identity=30.7984790874525, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17560676, Length=243, Percent_Identity=27.9835390946502, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=30.7392996108949, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17559104, Length=267, Percent_Identity=27.7153558052434, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=29.9212598425197, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=27.7566539923954, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=27.1653543307087, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=27.7566539923954, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=28.1853281853282, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17562906, Length=258, Percent_Identity=27.906976744186, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17538480, Length=258, Percent_Identity=29.0697674418605, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI72001658, Length=222, Percent_Identity=28.3783783783784, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=30.0751879699248, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=27.9245283018868, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17560220, Length=258, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=26.3358778625954, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17531453, Length=258, Percent_Identity=26.7441860465116, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=28.0769230769231, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=28.2945736434109, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=253, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=2e-13, Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=37.2549019607843, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=35.8267716535433, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=32.9268292682927, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=32.8063241106719, Blast_Score=98, Evalue=4e-21, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=32.9317269076305, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI21355319, Length=243, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI17737361, Length=229, Percent_Identity=31.4410480349345, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007236, Length=239, Percent_Identity=28.0334728033473, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24663911, Length=231, Percent_Identity=30.3030303030303, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24643142, Length=118, Percent_Identity=37.2881355932203, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24641232, Length=196, Percent_Identity=30.1020408163265, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI281364494, Length=202, Percent_Identity=31.1881188118812, Blast_Score=64, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25613; Mature: 25613
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVTGGGRGIGACTARLAGARGYAVGVNYLRDRDAAAGVADSIEQAGGNAIAVQADIGVE CEECCCCCCHHHHHHHHHCCCCCEECHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCC ADVLRLFETVEKELGRPAALVNNAARLEQQMRLEAMDPARLHRMFATNAVGTMLCSREAV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH RRMSRRRGGEGGAIVNVSSGAARYGSPGEYVDYAATKGAVETFTVGLAREVAEEGIRVNG HHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCEECC VRPGFIYTEMHAAGGEPGRVDRVKSLVPMQRGGQPEEVASAILWLLSDEASYVTGTFIDV CCCCEEEEEEECCCCCCCHHHHHHHHCCHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE AGGR CCCC >Mature Secondary Structure MIVTGGGRGIGACTARLAGARGYAVGVNYLRDRDAAAGVADSIEQAGGNAIAVQADIGVE CEECCCCCCHHHHHHHHHCCCCCEECHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCC ADVLRLFETVEKELGRPAALVNNAARLEQQMRLEAMDPARLHRMFATNAVGTMLCSREAV HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH RRMSRRRGGEGGAIVNVSSGAARYGSPGEYVDYAATKGAVETFTVGLAREVAEEGIRVNG HHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCEECC VRPGFIYTEMHAAGGEPGRVDRVKSLVPMQRGGQPEEVASAILWLLSDEASYVTGTFIDV CCCCEEEEEEECCCCCCCHHHHHHHHCCHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE AGGR CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]