| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is yvrN [H]
Identifier: 116620856
GI number: 116620856
Start: 2155759
End: 2158347
Strand: Direct
Name: yvrN [H]
Synonym: Acid_1737
Alternate gene names: 116620856
Gene position: 2155759-2158347 (Clockwise)
Preceding gene: 116620855
Following gene: 116620858
Centisome position: 21.63
GC content: 68.29
Gene sequence:
>2589_bases ATGACCGAGTGGCTGCACACACTCCGCCTCCGCGTCCGCGCCCTTCTCTTGCGCAGCCGGCTTGACCGCGACCTCGAAGC CGAAATCGAGTTTCACCTCGCCGAGCGCGTCGCGCGCTCCAACCTCACTCCCGCCGAGGCCCGCCGCGCCTTCGGCAACC CCACCGTCCTCAAGGAGGTCTCCCGCGAAATGTGGACCTTCCGCTGGCTTGAAATCCTGCTGCAAGACCTGCGCTACGCC GCGCGAACCCTCCGCAAGAGTCCCGGCTTCACCATCGTCGCCGTGCTCACGCTCGCCCTCGGCATCGGCGCCGACACCGC CATCTTCAGCGTGGTCGATGCCGTCATGCTCCGCCCGCTTCCCTTCGCCGAGCCCGCTCGCCTCGTCATGCTTTGGGGCA ATGTGCGCCGCCAGCGAGTGGAGCGCCGCGGCGCCTCCTATCCCGATTTCGTCGATTGGCGCGCGCTGAGCCACTCCTTC GAAGCCATGGCCGCCACCGAAAACACCGTCGCCACCATCACCGGCGGCGAAGAACCCGAGCGTGTGCGTGGCGAGTTCGT CTCCCAAACCTACTTCGACCTCGTTGGCGTTCGCCCCATCATCGGCCGCGAATTCCGGCCCGAGGAAGATCAGGTCCCGC AGCCCGATGCCGTCGCGCTGATCGCCGAGAGCCTGTGGCGGCGCCGCTTTGGCGCCGACCCCGCCATCACCGGCCGCACC CTGCAACTCGACGGCAAGGACTACACCATCCTCGGCGTCATGCCCGCCTGGTTCCACGGACTCGGCGATCACTCCGAACT CTGGATGCCGTACACGATGTCCGGCACCGCCGCCGATCTTGCCGAGCGCACTACGCGGTCCTTCCCGGTGCTGGCCCGCC TGCGTCCCGGCGTCACCGTCGCGCAGGCGCAGACCGAGTTCGATGGCATTTCGCTTCGCCTGCAGGCGGCTTATCCCGCC GCTAATGAAGGCCGCGCCGTAGAGGTCGCGCCGCTCGAACGCGAACTCCTCGGCGACCTGCGCCAGCCTCTCCTCGTGCT GCTCTGCGCCGTCGGCTTCGTGCTGCTCATCGCCTGCACCAACGTTGCCAGCCTCGTGCTTGCCCGCTCCGAAGCGCGGC AGCGCGAAATCGGCATGCGTATCGCGCTCGGCGCCGGACGCGCCCGCGTCCTCGCGCAGCTCTTCACCGAAAGCTGCATG CTCGCGCTGCTCGGCGCCGCCGCCGGCTTGCTGCTCGCCCATTGGGGCTCGCACGCGCTCATCACCGCCAGCCCGATCTG GTTTCCCAGCTACATCCAACCCGGCGTCGATCTGCGGGTGGCGCTCTTCTGCACCCTCATCGCCGGCAGCTCCGGCATCG CCCTCGCGCTCGTTCCGGCGCTTCAGATGCGGAACGCGAAGGCTTCCGGCCATGCGGTCGATCGCCGCGAGGCACGCCGC TTCCGAGGCGCACTCGTGGTCGCCGAAGTCGCCTTCGCCATGCTGCTGCTCACCGGCGCGGGCCTGCTCATCCGCAGCGT GCGCCAACTCGCCGCCATCCGTCCCGGCTATGATCCCTCGCACCTGCTGACCTTCCGCATCGGCCTGCCCCGGCCCACCG ACGCGCGCGAATTGCAGAATCGCCTGGCGCGCATTCCTTCCGTGGAATCCGTCAGCCTGGGCAGCGACGTGCCGCTCGAT GGCAACGGCGCGACCTTCTACGCCGCCGAAGGCCAGCCGCCCGTCACGGCGCAGAACCGCCCGAGGGCCTATCCGCATCG CGTCAGCCCGGATTTTTTCCACACGCTGCGCATTCCCTTCCTTGCCGGACGGCCCTTCACCGAGGGCGAACTGCACGAAG ATGCGACCGTCGTCATCGTGAGTGAAGGCCTCGCCAAACGCTTCTGGCCGGGCGCCGATGCCATCGGCAAGCGCATCAAG ACGGGCACGTTGGAATCCAAAACTCCGTGGATGACCATCGTCGGCGTGGTCAATGAATTGAAGTACCGCGCCCTGCCCGA GAACCCGACCGCCGACCCCGATATCTTCGTGCCCCTCTCCGGCCCCGTGCGCAGCCCCGCCGTAATGCTCCGCACCACGC TGCCGCCCGCGTCGCTCGCGCCCGCGGTGCGCAGAATGCTGCACGACGCCGACGCCACCACCGTGGTCTACGATCTGCAA ACGCTGGAGGAACTGATGGCGCGCCAAACCGCCATGTCGCGTTTCACCGGCTGGCTGATGGGCATTTTCGCGGCCTCCGC GCTGCTGCTGGCCATGATCGGAATCTATGGCGTGATGTCGTATTCCGTGGCGCAGCGCACCCGCGAAATCGGCATCCGCA TGGCGCTCGGCGCCGATCGCCGGCAGGTGCTGCGCATGATTGCGGGCAACGGCATGCTGCTCATCACCGCCGGATTGGCG CTTGGCGCCGCGGCCGCCATTTCATTGGCCCGCTTGATCGATAATCTGCTTTACGACGTAAAGCCCGGCGACCCGGTCGC CTTCCTGGCCGCCGCCGCTGCCCTCGCGCTGGTTGCCCTCGTCGCCTGCCTCGCCCCCGCGACGCGCGCCACCCGCATCG CGCCTGCGTCAGCCCTCCGCAACGAATAG
Upstream 100 bases:
>100_bases AATATTACAAGCTCACCGCGGCCGGCCGGAAACACCTGGCCGAGGAATCCGCCAGTTGGAACCGGCTCTCCGGCGCCGTG GCGCGCATTATGCAAACCGC
Downstream 100 bases:
>100_bases TTCTGCGCCAACGAGCCGCGACCGTGAGGGAGCGCTACCCGGACCTTCACGGTGGGTGGCGCTCCCTCACGGGCGCGTTA GTGTGTTGACCCTAGCTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 862; Mature: 861
Protein sequence:
>862_residues MTEWLHTLRLRVRALLLRSRLDRDLEAEIEFHLAERVARSNLTPAEARRAFGNPTVLKEVSREMWTFRWLEILLQDLRYA ARTLRKSPGFTIVAVLTLALGIGADTAIFSVVDAVMLRPLPFAEPARLVMLWGNVRRQRVERRGASYPDFVDWRALSHSF EAMAATENTVATITGGEEPERVRGEFVSQTYFDLVGVRPIIGREFRPEEDQVPQPDAVALIAESLWRRRFGADPAITGRT LQLDGKDYTILGVMPAWFHGLGDHSELWMPYTMSGTAADLAERTTRSFPVLARLRPGVTVAQAQTEFDGISLRLQAAYPA ANEGRAVEVAPLERELLGDLRQPLLVLLCAVGFVLLIACTNVASLVLARSEARQREIGMRIALGAGRARVLAQLFTESCM LALLGAAAGLLLAHWGSHALITASPIWFPSYIQPGVDLRVALFCTLIAGSSGIALALVPALQMRNAKASGHAVDRREARR FRGALVVAEVAFAMLLLTGAGLLIRSVRQLAAIRPGYDPSHLLTFRIGLPRPTDARELQNRLARIPSVESVSLGSDVPLD GNGATFYAAEGQPPVTAQNRPRAYPHRVSPDFFHTLRIPFLAGRPFTEGELHEDATVVIVSEGLAKRFWPGADAIGKRIK TGTLESKTPWMTIVGVVNELKYRALPENPTADPDIFVPLSGPVRSPAVMLRTTLPPASLAPAVRRMLHDADATTVVYDLQ TLEELMARQTAMSRFTGWLMGIFAASALLLAMIGIYGVMSYSVAQRTREIGIRMALGADRRQVLRMIAGNGMLLITAGLA LGAAAAISLARLIDNLLYDVKPGDPVAFLAAAAALALVALVACLAPATRATRIAPASALRNE
Sequences:
>Translated_862_residues MTEWLHTLRLRVRALLLRSRLDRDLEAEIEFHLAERVARSNLTPAEARRAFGNPTVLKEVSREMWTFRWLEILLQDLRYA ARTLRKSPGFTIVAVLTLALGIGADTAIFSVVDAVMLRPLPFAEPARLVMLWGNVRRQRVERRGASYPDFVDWRALSHSF EAMAATENTVATITGGEEPERVRGEFVSQTYFDLVGVRPIIGREFRPEEDQVPQPDAVALIAESLWRRRFGADPAITGRT LQLDGKDYTILGVMPAWFHGLGDHSELWMPYTMSGTAADLAERTTRSFPVLARLRPGVTVAQAQTEFDGISLRLQAAYPA ANEGRAVEVAPLERELLGDLRQPLLVLLCAVGFVLLIACTNVASLVLARSEARQREIGMRIALGAGRARVLAQLFTESCM LALLGAAAGLLLAHWGSHALITASPIWFPSYIQPGVDLRVALFCTLIAGSSGIALALVPALQMRNAKASGHAVDRREARR FRGALVVAEVAFAMLLLTGAGLLIRSVRQLAAIRPGYDPSHLLTFRIGLPRPTDARELQNRLARIPSVESVSLGSDVPLD GNGATFYAAEGQPPVTAQNRPRAYPHRVSPDFFHTLRIPFLAGRPFTEGELHEDATVVIVSEGLAKRFWPGADAIGKRIK TGTLESKTPWMTIVGVVNELKYRALPENPTADPDIFVPLSGPVRSPAVMLRTTLPPASLAPAVRRMLHDADATTVVYDLQ TLEELMARQTAMSRFTGWLMGIFAASALLLAMIGIYGVMSYSVAQRTREIGIRMALGADRRQVLRMIAGNGMLLITAGLA LGAAAAISLARLIDNLLYDVKPGDPVAFLAAAAALALVALVACLAPATRATRIAPASALRNE >Mature_861_residues TEWLHTLRLRVRALLLRSRLDRDLEAEIEFHLAERVARSNLTPAEARRAFGNPTVLKEVSREMWTFRWLEILLQDLRYAA RTLRKSPGFTIVAVLTLALGIGADTAIFSVVDAVMLRPLPFAEPARLVMLWGNVRRQRVERRGASYPDFVDWRALSHSFE AMAATENTVATITGGEEPERVRGEFVSQTYFDLVGVRPIIGREFRPEEDQVPQPDAVALIAESLWRRRFGADPAITGRTL QLDGKDYTILGVMPAWFHGLGDHSELWMPYTMSGTAADLAERTTRSFPVLARLRPGVTVAQAQTEFDGISLRLQAAYPAA NEGRAVEVAPLERELLGDLRQPLLVLLCAVGFVLLIACTNVASLVLARSEARQREIGMRIALGAGRARVLAQLFTESCML ALLGAAAGLLLAHWGSHALITASPIWFPSYIQPGVDLRVALFCTLIAGSSGIALALVPALQMRNAKASGHAVDRREARRF RGALVVAEVAFAMLLLTGAGLLIRSVRQLAAIRPGYDPSHLLTFRIGLPRPTDARELQNRLARIPSVESVSLGSDVPLDG NGATFYAAEGQPPVTAQNRPRAYPHRVSPDFFHTLRIPFLAGRPFTEGELHEDATVVIVSEGLAKRFWPGADAIGKRIKT GTLESKTPWMTIVGVVNELKYRALPENPTADPDIFVPLSGPVRSPAVMLRTTLPPASLAPAVRRMLHDADATTVVYDLQT LEELMARQTAMSRFTGWLMGIFAASALLLAMIGIYGVMSYSVAQRTREIGIRMALGADRRQVLRMIAGNGMLLITAGLAL GAAAAISLARLIDNLLYDVKPGDPVAFLAAAAALALVALVACLAPATRATRIAPASALRNE
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1787105, Length=327, Percent_Identity=26.9113149847095, Blast_Score=74, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 93940; Mature: 93808
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEWLHTLRLRVRALLLRSRLDRDLEAEIEFHLAERVARSNLTPAEARRAFGNPTVLKEV CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH SREMWTFRWLEILLQDLRYAARTLRKSPGFTIVAVLTLALGIGADTAIFSVVDAVMLRPL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC PFAEPARLVMLWGNVRRQRVERRGASYPDFVDWRALSHSFEAMAATENTVATITGGEEPE CCCCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH RVRGEFVSQTYFDLVGVRPIIGREFRPEEDQVPQPDAVALIAESLWRRRFGADPAITGRT HHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE LQLDGKDYTILGVMPAWFHGLGDHSELWMPYTMSGTAADLAERTTRSFPVLARLRPGVTV EEECCCCEEEEEECHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHCCCCCEE AQAQTEFDGISLRLQAAYPAANEGRAVEVAPLERELLGDLRQPLLVLLCAVGFVLLIACT EECCCCCCCEEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVASLVLARSEARQREIGMRIALGAGRARVLAQLFTESCMLALLGAAAGLLLAHWGSHAL HHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE ITASPIWFPSYIQPGVDLRVALFCTLIAGSSGIALALVPALQMRNAKASGHAVDRREARR EEECCCCCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH FRGALVVAEVAFAMLLLTGAGLLIRSVRQLAAIRPGYDPSHLLTFRIGLPRPTDARELQN HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHH RLARIPSVESVSLGSDVPLDGNGATFYAAEGQPPVTAQNRPRAYPHRVSPDFFHTLRIPF HHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC LAGRPFTEGELHEDATVVIVSEGLAKRFWPGADAIGKRIKTGTLESKTPWMTIVGVVNEL CCCCCCCCCCCCCCCEEEEECCCHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH KYRALPENPTADPDIFVPLSGPVRSPAVMLRTTLPPASLAPAVRRMLHDADATTVVYDLQ HHCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEHHHH TLEELMARQTAMSRFTGWLMGIFAASALLLAMIGIYGVMSYSVAQRTREIGIRMALGADR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCH RQVLRMIAGNGMLLITAGLALGAAAAISLARLIDNLLYDVKPGDPVAFLAAAAALALVAL HHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH VACLAPATRATRIAPASALRNE HHHHCCCHHHHHCCCHHHHCCC >Mature Secondary Structure TEWLHTLRLRVRALLLRSRLDRDLEAEIEFHLAERVARSNLTPAEARRAFGNPTVLKEV CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHH SREMWTFRWLEILLQDLRYAARTLRKSPGFTIVAVLTLALGIGADTAIFSVVDAVMLRPL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC PFAEPARLVMLWGNVRRQRVERRGASYPDFVDWRALSHSFEAMAATENTVATITGGEEPE CCCCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHH RVRGEFVSQTYFDLVGVRPIIGREFRPEEDQVPQPDAVALIAESLWRRRFGADPAITGRT HHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCE LQLDGKDYTILGVMPAWFHGLGDHSELWMPYTMSGTAADLAERTTRSFPVLARLRPGVTV EEECCCCEEEEEECHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHCCCCCEE AQAQTEFDGISLRLQAAYPAANEGRAVEVAPLERELLGDLRQPLLVLLCAVGFVLLIACT EECCCCCCCEEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NVASLVLARSEARQREIGMRIALGAGRARVLAQLFTESCMLALLGAAAGLLLAHWGSHAL HHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE ITASPIWFPSYIQPGVDLRVALFCTLIAGSSGIALALVPALQMRNAKASGHAVDRREARR EEECCCCCHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH FRGALVVAEVAFAMLLLTGAGLLIRSVRQLAAIRPGYDPSHLLTFRIGLPRPTDARELQN HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHH RLARIPSVESVSLGSDVPLDGNGATFYAAEGQPPVTAQNRPRAYPHRVSPDFFHTLRIPF HHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC LAGRPFTEGELHEDATVVIVSEGLAKRFWPGADAIGKRIKTGTLESKTPWMTIVGVVNEL CCCCCCCCCCCCCCCEEEEECCCHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHH KYRALPENPTADPDIFVPLSGPVRSPAVMLRTTLPPASLAPAVRRMLHDADATTVVYDLQ HHCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEHHHH TLEELMARQTAMSRFTGWLMGIFAASALLLAMIGIYGVMSYSVAQRTREIGIRMALGADR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCH RQVLRMIAGNGMLLITAGLALGAAAAISLARLIDNLLYDVKPGDPVAFLAAAAALALVAL HHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH VACLAPATRATRIAPASALRNE HHHHCCCHHHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 10568751; 3145906 [H]