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The map label for this gene is yqeZ [H]

Identifier: 116620619

GI number: 116620619

Start: 1836315

End: 1837604

Strand: Direct

Name: yqeZ [H]

Synonym: Acid_1498

Alternate gene names: 116620619

Gene position: 1836315-1837604 (Clockwise)

Preceding gene: 116620617

Following gene: 116620620

Centisome position: 18.43

GC content: 64.5

Gene sequence:

>1290_bases
GTGTATAGTGAGGGAAGATTGCGAGTACGCGCGGTTTTCATGCTGGCGCTTGCGCCGGCGATCGGGGCCGTTGCCGCGCC
ACCGCGGGTAATCACGGTGGATGTCGATGGGATGGTCCATCCCATCACAGCGGAGATTGTGAACGGCGCACTGCTGCAAG
CGCGGGATCAACATGCATCGCTGGTCGTGATCCGCCTCAATACTCCAGGCGGGTTGATGGACGCGATGCGTTCGACGATC
GAGAAGATTCTGGCTTCGCCGGTCCCTGTAGTCACTTATGTTTCGCCGAGCGGCGGACGCGCGGCCTCGGCGGGATTTTT
TCTGCTGGAGGCGGGCGACGTGGCGGCGATGGCGCCGGGCACCGAGACGGGCGCCGCGCACCCGGTCCTGATCGGCAGTG
AGATGGATCCGGTGATGAAGCAGAAGGTAGAGAACGACGCGGCCGCATACCTGCGCAGCATCAGCGAGAAGCGGGGACGC
AACAGTGCGCTGGCGGAGACGGCGGTTCGGGAAAGCAAGAGCTTCACGGATCGTGAGGCGCTGGATCAGAAGCTGGTGGA
CGTGATTGAGCCGGGCGACCGGCAGTTACTGGCGGCGCTCGACGGGCGAACCGTCACCCGGTTCGATGGCAGCTCCACGA
CGCTGCACACGGCGGGCGCCGAGATTGTGGCGTACGAGCGGACGCGGCGGCAGCAGATCATCGCGGCGATCGCCGACCCG
AACATCGCGCTGATCCTGCTGGTAATCGGCGCGCTTGGGATCTATGTGGAATTCTCCTCGCCGGGGCTGGTAGCGCCCGG
AGTGATCGGCGGGATTCTGGTGCTGCTCGGGCTCTCGGCGATTTCGGTGCTGCCGCTCAACTGGCTGGGCGCGGCGCTCA
TGATTCTGGCATTCACGCTCTTCGTGCTCGAGGTGAAATTCACTTCGCATGGAATTTTGGGAGCGGGCGGCACGGTGGCG
ATGGTGTTGGGGGCCGTGATGCTGGTGGATAGTCCGGTGCCGGAACTGCGGATTCACTGGAGCACCGCGATCGCTCTCGC
GCTGCCATTTTCGGCGATCACGGTTTTCCTGCTGACGATTGCGGCGCGGGCGCGGCGGAATAAAGTCGAGACGGGCGTCG
AGGGCATGATCGGGCAGTTGGGCACCGCCATGACCAACCTGACGCCGGAAGGCAAGGTCTTTGTCCACGGCGAATACTGG
AACGCGATCGCGGTACGTCCCGCCGAGGCAGGCGCGCGCGTCAAGGTGACCGCGATCGACGGGCTGAGGGTGACGGTGGA
ACCCATGTAG

Upstream 100 bases:

>100_bases
AGGGGTTACAATCGCATCAAAAGTTTTAATGCTTTGAATTACCGGATCGTGCAACACAATCAATGCATTAGGAGGCTTAC
AGCCACTGCCGTAGGGCGGG

Downstream 100 bases:

>100_bases
CTGTTGAGGAGCCAACTATGAACGATCTAAGTCCGGTGGTATTGGTCTTCGTGCTGGTGGTCGGCATCTGGCTGCTGAAT
TCGATCAAGATTCTGCGCGA

Product: nodulation efficiency protein NfeD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MYSEGRLRVRAVFMLALAPAIGAVAAPPRVITVDVDGMVHPITAEIVNGALLQARDQHASLVVIRLNTPGGLMDAMRSTI
EKILASPVPVVTYVSPSGGRAASAGFFLLEAGDVAAMAPGTETGAAHPVLIGSEMDPVMKQKVENDAAAYLRSISEKRGR
NSALAETAVRESKSFTDREALDQKLVDVIEPGDRQLLAALDGRTVTRFDGSSTTLHTAGAEIVAYERTRRQQIIAAIADP
NIALILLVIGALGIYVEFSSPGLVAPGVIGGILVLLGLSAISVLPLNWLGAALMILAFTLFVLEVKFTSHGILGAGGTVA
MVLGAVMLVDSPVPELRIHWSTAIALALPFSAITVFLLTIAARARRNKVETGVEGMIGQLGTAMTNLTPEGKVFVHGEYW
NAIAVRPAEAGARVKVTAIDGLRVTVEPM

Sequences:

>Translated_429_residues
MYSEGRLRVRAVFMLALAPAIGAVAAPPRVITVDVDGMVHPITAEIVNGALLQARDQHASLVVIRLNTPGGLMDAMRSTI
EKILASPVPVVTYVSPSGGRAASAGFFLLEAGDVAAMAPGTETGAAHPVLIGSEMDPVMKQKVENDAAAYLRSISEKRGR
NSALAETAVRESKSFTDREALDQKLVDVIEPGDRQLLAALDGRTVTRFDGSSTTLHTAGAEIVAYERTRRQQIIAAIADP
NIALILLVIGALGIYVEFSSPGLVAPGVIGGILVLLGLSAISVLPLNWLGAALMILAFTLFVLEVKFTSHGILGAGGTVA
MVLGAVMLVDSPVPELRIHWSTAIALALPFSAITVFLLTIAARARRNKVETGVEGMIGQLGTAMTNLTPEGKVFVHGEYW
NAIAVRPAEAGARVKVTAIDGLRVTVEPM
>Mature_429_residues
MYSEGRLRVRAVFMLALAPAIGAVAAPPRVITVDVDGMVHPITAEIVNGALLQARDQHASLVVIRLNTPGGLMDAMRSTI
EKILASPVPVVTYVSPSGGRAASAGFFLLEAGDVAAMAPGTETGAAHPVLIGSEMDPVMKQKVENDAAAYLRSISEKRGR
NSALAETAVRESKSFTDREALDQKLVDVIEPGDRQLLAALDGRTVTRFDGSSTTLHTAGAEIVAYERTRRQQIIAAIADP
NIALILLVIGALGIYVEFSSPGLVAPGVIGGILVLLGLSAISVLPLNWLGAALMILAFTLFVLEVKFTSHGILGAGGTVA
MVLGAVMLVDSPVPELRIHWSTAIALALPFSAITVFLLTIAARARRNKVETGVEGMIGQLGTAMTNLTPEGKVFVHGEYW
NAIAVRPAEAGARVKVTAIDGLRVTVEPM

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002810
- InterPro:   IPR002825 [H]

Pfam domain/function: PF01972 DUF114; PF01957 NfeD [H]

EC number: NA

Molecular weight: Translated: 45028; Mature: 45028

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSEGRLRVRAVFMLALAPAIGAVAAPPRVITVDVDGMVHPITAEIVNGALLQARDQHAS
CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCHHHHCCCCCCE
LVVIRLNTPGGLMDAMRSTIEKILASPVPVVTYVSPSGGRAASAGFFLLEAGDVAAMAPG
EEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCEEEECCC
TETGAAHPVLIGSEMDPVMKQKVENDAAAYLRSISEKRGRNSALAETAVRESKSFTDREA
CCCCCCCCEEECCCCCHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHH
LDQKLVDVIEPGDRQLLAALDGRTVTRFDGSSTTLHTAGAEIVAYERTRRQQIIAAIADP
HHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCEEEECCCEEEEEHHHHHHHHHHEECCC
NIALILLVIGALGIYVEFSSPGLVAPGVIGGILVLLGLSAISVLPLNWLGAALMILAFTL
CHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FVLEVKFTSHGILGAGGTVAMVLGAVMLVDSPVPELRIHWSTAIALALPFSAITVFLLTI
HHHEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
AARARRNKVETGVEGMIGQLGTAMTNLTPEGKVFVHGEYWNAIAVRPAEAGARVKVTAID
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEC
GLRVTVEPM
CEEEEEECC
>Mature Secondary Structure
MYSEGRLRVRAVFMLALAPAIGAVAAPPRVITVDVDGMVHPITAEIVNGALLQARDQHAS
CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCHHHHCCCCCCE
LVVIRLNTPGGLMDAMRSTIEKILASPVPVVTYVSPSGGRAASAGFFLLEAGDVAAMAPG
EEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCEEEECCC
TETGAAHPVLIGSEMDPVMKQKVENDAAAYLRSISEKRGRNSALAETAVRESKSFTDREA
CCCCCCCCEEECCCCCHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHH
LDQKLVDVIEPGDRQLLAALDGRTVTRFDGSSTTLHTAGAEIVAYERTRRQQIIAAIADP
HHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCEEEECCCEEEEEHHHHHHHHHHEECCC
NIALILLVIGALGIYVEFSSPGLVAPGVIGGILVLLGLSAISVLPLNWLGAALMILAFTL
CHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
FVLEVKFTSHGILGAGGTVAMVLGAVMLVDSPVPELRIHWSTAIALALPFSAITVFLLTI
HHHEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHH
AARARRNKVETGVEGMIGQLGTAMTNLTPEGKVFVHGEYWNAIAVRPAEAGARVKVTAID
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEC
GLRVTVEPM
CEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]