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The map label for this gene is rfbA [H]

Identifier: 116619690

GI number: 116619690

Start: 670585

End: 671382

Strand: Direct

Name: rfbA [H]

Synonym: Acid_0555

Alternate gene names: 116619690

Gene position: 670585-671382 (Clockwise)

Preceding gene: 116619689

Following gene: 116619691

Centisome position: 6.73

GC content: 52.88

Gene sequence:

>798_bases
ATGTACCACTTTGCCCCATCCGGGCGCGGCTTCATAATGTGGAACGGTGATTACGGCTTCCTCTTGTCCAATCTGGTCAA
GAAGGATTTTAAAGTTCGCTATCGGAACATGTCCTTGGGGATCTTCTGGTCCCTTCTCAACCCAATGGTGACGATGGTTG
CGTTGACCTTTGTCTTTACCCAGATTTTCCCCAATGGACAGCCGCGTTTTCCAGTATTTGTGTTGTGTGGACTGGTCCCG
TTCAATTTCTTCTCGCTAGCCTGGAGCAGCGGCACGTCATCGTTGATCGAAAACTCCTCCTTGATCAAACGCGTGCCGGT
TCCACGGGAAATCGTGCCCGTGGCCACGGTGTTGGGAAACTCCATTCACCTGTTGATCCAGATCGGGCTGCTTTTGACCT
TCACGCTCGCTTACGGCTGCGGGGTGAATCGCTACTGGCTCTGGCTTCCATTTGTGTGGGGGATGCTGATTCTGTTTGCC
TGCGGACTTGCCCTGATTTCCTCGGCAGTCAACGTCTACGTCCGCGATACGAGGTACATCGTGGAATCGGCGAATACACT
GCTATTTTGGATCGTGCCTATTTTCTACTCGTTTTCCAAGGTCCCACAGGAATTCCGAGCGATTTACGAACTCAATCCCG
TGGCCGCGATCGTCCTGGCCCTGCGCAATATTCTGATGGAGGGAGTGCCTCCCCCGAACACGCTGCTCGCCAAACTTTGC
GGCAGTTCGATTTTCATGATTTGCGTCGGATTCCTCGTATTCCGCAGACTGAAGCGGGGATTCTACGATTACCTGTAG

Upstream 100 bases:

>100_bases
TATCTACATGCAGGCGATCAGCCCCTTTGGATCCGCGCCATAGGGGCATCACGTTTAATCGGGCTATAATGGCTTTTCCT
CGGGTGGTTTCCTTCTTTCG

Downstream 100 bases:

>100_bases
CTTATGGCTCTGATCGAATTTCAGCACGTATCCAAAACCTTCAGCCATACCGGCGGCGCCAAGCTGCTGGGCGCCCATCT
GCGCGAGCGCTTGCGGCCGC

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MYHFAPSGRGFIMWNGDYGFLLSNLVKKDFKVRYRNMSLGIFWSLLNPMVTMVALTFVFTQIFPNGQPRFPVFVLCGLVP
FNFFSLAWSSGTSSLIENSSLIKRVPVPREIVPVATVLGNSIHLLIQIGLLLTFTLAYGCGVNRYWLWLPFVWGMLILFA
CGLALISSAVNVYVRDTRYIVESANTLLFWIVPIFYSFSKVPQEFRAIYELNPVAAIVLALRNILMEGVPPPNTLLAKLC
GSSIFMICVGFLVFRRLKRGFYDYL

Sequences:

>Translated_265_residues
MYHFAPSGRGFIMWNGDYGFLLSNLVKKDFKVRYRNMSLGIFWSLLNPMVTMVALTFVFTQIFPNGQPRFPVFVLCGLVP
FNFFSLAWSSGTSSLIENSSLIKRVPVPREIVPVATVLGNSIHLLIQIGLLLTFTLAYGCGVNRYWLWLPFVWGMLILFA
CGLALISSAVNVYVRDTRYIVESANTLLFWIVPIFYSFSKVPQEFRAIYELNPVAAIVLALRNILMEGVPPPNTLLAKLC
GSSIFMICVGFLVFRRLKRGFYDYL
>Mature_265_residues
MYHFAPSGRGFIMWNGDYGFLLSNLVKKDFKVRYRNMSLGIFWSLLNPMVTMVALTFVFTQIFPNGQPRFPVFVLCGLVP
FNFFSLAWSSGTSSLIENSSLIKRVPVPREIVPVATVLGNSIHLLIQIGLLLTFTLAYGCGVNRYWLWLPFVWGMLILFA
CGLALISSAVNVYVRDTRYIVESANTLLFWIVPIFYSFSKVPQEFRAIYELNPVAAIVLALRNILMEGVPPPNTLLAKLC
GSSIFMICVGFLVFRRLKRGFYDYL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30073; Mature: 30073

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHFAPSGRGFIMWNGDYGFLLSNLVKKDFKVRYRNMSLGIFWSLLNPMVTMVALTFVFT
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
QIFPNGQPRFPVFVLCGLVPFNFFSLAWSSGTSSLIENSSLIKRVPVPREIVPVATVLGN
HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHCCCCHHHHHHHHHHCC
SIHLLIQIGLLLTFTLAYGCGVNRYWLWLPFVWGMLILFACGLALISSAVNVYVRDTRYI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VESANTLLFWIVPIFYSFSKVPQEFRAIYELNPVAAIVLALRNILMEGVPPPNTLLAKLC
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
GSSIFMICVGFLVFRRLKRGFYDYL
CCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYHFAPSGRGFIMWNGDYGFLLSNLVKKDFKVRYRNMSLGIFWSLLNPMVTMVALTFVFT
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
QIFPNGQPRFPVFVLCGLVPFNFFSLAWSSGTSSLIENSSLIKRVPVPREIVPVATVLGN
HHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHCCCCHHHHHHHHHHCC
SIHLLIQIGLLLTFTLAYGCGVNRYWLWLPFVWGMLILFACGLALISSAVNVYVRDTRYI
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VESANTLLFWIVPIFYSFSKVPQEFRAIYELNPVAAIVLALRNILMEGVPPPNTLLAKLC
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
GSSIFMICVGFLVFRRLKRGFYDYL
CCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]