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The map label for this gene is rfbB [H]

Identifier: 116619691

GI number: 116619691

Start: 671386

End: 672117

Strand: Direct

Name: rfbB [H]

Synonym: Acid_0556

Alternate gene names: 116619691

Gene position: 671386-672117 (Clockwise)

Preceding gene: 116619690

Following gene: 116619696

Centisome position: 6.74

GC content: 59.56

Gene sequence:

>732_bases
ATGGCTCTGATCGAATTTCAGCACGTATCCAAAACCTTCAGCCATACCGGCGGCGCCAAGCTGCTGGGCGCCCATCTGCG
CGAGCGCTTGCGGCCGCAAAAGCGCGACGTCTTCTACGCCCTTAAGAATGTCTCGTTTCAGGTGGAACCGGGTCACAGCA
TGGCGATCATCGGCGGCAATGGTGCGGGGAAGAGCACTCTGCTTAGCCTGGTGGCCGGTCTCTCGCGGCCCAATGCCGGA
CGCGTCAGCGTAACCGGTAAGGTGGCGGCCCTGCTGGAACTCGGCTCCGGGTTTCATGCGGACCTCACCGGCAGGGAGAA
CGTAAGCCTGAATGCCTCGCTGTTAGGTTTGAGCCGCAAGCGCGCGGAGGAGTGTTTCGGCGCCATCGTCGAGTTTTCCG
GGATCGGCGACTTCATCGAGGAGCCGATCCGCACCTATTCGAGCGGCATGATCATGCGGCTGGCGTTTTCGGTAGCAGTG
CACATGGATCCCGATATTCTGATCATCGACGAAGTTCTGGCGGTTGGCGATCAGAATTTTCAAGCCAAATGCTTTGAGAA
GATAGCCGGGTTCAAGCATGCGGGCAAGACGCTATTGTTCGTCTCGCACACCCCGGATATGGTGAGGTACCTCTGCGACC
AGGCTCTATGGCTGCATCATGGTGAAGCCATGATGGTGGGCAGCCCCGAGGAAGTCCTGCAGGCGTATTCGGCACGGCCA
GTGGAGGGCTAG

Upstream 100 bases:

>100_bases
GCTGCTCGCCAAACTTTGCGGCAGTTCGATTTTCATGATTTGCGTCGGATTCCTCGTATTCCGCAGACTGAAGCGGGGAT
TCTACGATTACCTGTAGCTT

Downstream 100 bases:

>100_bases
CGCTCGCGCCAGCGGCCTTTCAGCGACTCTTCCTTGAGGTCGAGATCGGCCATTCCCCAATTCTCGTGATTGAAGATCAG
CGGCGATTTGAGGCGCCGCA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MALIEFQHVSKTFSHTGGAKLLGAHLRERLRPQKRDVFYALKNVSFQVEPGHSMAIIGGNGAGKSTLLSLVAGLSRPNAG
RVSVTGKVAALLELGSGFHADLTGRENVSLNASLLGLSRKRAEECFGAIVEFSGIGDFIEEPIRTYSSGMIMRLAFSVAV
HMDPDILIIDEVLAVGDQNFQAKCFEKIAGFKHAGKTLLFVSHTPDMVRYLCDQALWLHHGEAMMVGSPEEVLQAYSARP
VEG

Sequences:

>Translated_243_residues
MALIEFQHVSKTFSHTGGAKLLGAHLRERLRPQKRDVFYALKNVSFQVEPGHSMAIIGGNGAGKSTLLSLVAGLSRPNAG
RVSVTGKVAALLELGSGFHADLTGRENVSLNASLLGLSRKRAEECFGAIVEFSGIGDFIEEPIRTYSSGMIMRLAFSVAV
HMDPDILIIDEVLAVGDQNFQAKCFEKIAGFKHAGKTLLFVSHTPDMVRYLCDQALWLHHGEAMMVGSPEEVLQAYSARP
VEG
>Mature_242_residues
ALIEFQHVSKTFSHTGGAKLLGAHLRERLRPQKRDVFYALKNVSFQVEPGHSMAIIGGNGAGKSTLLSLVAGLSRPNAGR
VSVTGKVAALLELGSGFHADLTGRENVSLNASLLGLSRKRAEECFGAIVEFSGIGDFIEEPIRTYSSGMIMRLAFSVAVH
MDPDILIIDEVLAVGDQNFQAKCFEKIAGFKHAGKTLLFVSHTPDMVRYLCDQALWLHHGEAMMVGSPEEVLQAYSARPV
EG

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI6005701, Length=203, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI153792144, Length=203, Percent_Identity=26.6009852216749, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI27477115, Length=222, Percent_Identity=24.7747747747748, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI27436953, Length=201, Percent_Identity=26.3681592039801, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI150417984, Length=210, Percent_Identity=24.7619047619048, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI116734710, Length=225, Percent_Identity=25.7777777777778, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI31657092, Length=208, Percent_Identity=24.0384615384615, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI87081709, Length=214, Percent_Identity=26.1682242990654, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87081782, Length=211, Percent_Identity=24.1706161137441, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789032, Length=212, Percent_Identity=25.4716981132075, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=28.2296650717703, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1789672, Length=211, Percent_Identity=25.5924170616114, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787758, Length=204, Percent_Identity=22.5490196078431, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1786319, Length=197, Percent_Identity=29.9492385786802, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI48995001, Length=198, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI48994943, Length=221, Percent_Identity=25.3393665158371, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788165, Length=197, Percent_Identity=28.9340101522843, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786703, Length=203, Percent_Identity=29.064039408867, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081791, Length=212, Percent_Identity=20.2830188679245, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790467, Length=213, Percent_Identity=23.943661971831, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1789873, Length=234, Percent_Identity=25.6410256410256, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=22.4390243902439, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790739, Length=224, Percent_Identity=26.7857142857143, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=211, Percent_Identity=26.0663507109005, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=211, Percent_Identity=26.0663507109005, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=211, Percent_Identity=26.0663507109005, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=210, Percent_Identity=24.7619047619048, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=214, Percent_Identity=24.2990654205607, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221512771, Length=208, Percent_Identity=26.9230769230769, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24643674, Length=211, Percent_Identity=24.1706161137441, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24666092, Length=204, Percent_Identity=25.4901960784314, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24648314, Length=194, Percent_Identity=25.2577319587629, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007184, Length=233, Percent_Identity=22.3175965665236, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221500365, Length=233, Percent_Identity=22.3175965665236, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28574150, Length=234, Percent_Identity=23.9316239316239, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI116007328, Length=234, Percent_Identity=23.9316239316239, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 26294; Mature: 26162

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALIEFQHVSKTFSHTGGAKLLGAHLRERLRPQKRDVFYALKNVSFQVEPGHSMAIIGGN
CCEEEHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCCEEEEEECC
GAGKSTLLSLVAGLSRPNAGRVSVTGKVAALLELGSGFHADLTGRENVSLNASLLGLSRK
CCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHH
RAEECFGAIVEFSGIGDFIEEPIRTYSSGMIMRLAFSVAVHMDPDILIIDEVLAVGDQNF
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHEECCCCEEEEEHHHHHCCCCH
QAKCFEKIAGFKHAGKTLLFVSHTPDMVRYLCDQALWLHHGEAMMVGSPEEVLQAYSARP
HHHHHHHHHCHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCC
VEG
CCC
>Mature Secondary Structure 
ALIEFQHVSKTFSHTGGAKLLGAHLRERLRPQKRDVFYALKNVSFQVEPGHSMAIIGGN
CEEEHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEECCCCEEEEEECC
GAGKSTLLSLVAGLSRPNAGRVSVTGKVAALLELGSGFHADLTGRENVSLNASLLGLSRK
CCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHH
RAEECFGAIVEFSGIGDFIEEPIRTYSSGMIMRLAFSVAVHMDPDILIIDEVLAVGDQNF
HHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHEECCCCEEEEEHHHHHCCCCH
QAKCFEKIAGFKHAGKTLLFVSHTPDMVRYLCDQALWLHHGEAMMVGSPEEVLQAYSARP
HHHHHHHHHCHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCC
VEG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]