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The map label for this gene is hcp1 [H]

Identifier: 116619375

GI number: 116619375

Start: 315027

End: 315515

Strand: Direct

Name: hcp1 [H]

Synonym: Acid_0233

Alternate gene names: 116619375

Gene position: 315027-315515 (Clockwise)

Preceding gene: 116619374

Following gene: 116619376

Centisome position: 3.16

GC content: 57.26

Gene sequence:

>489_bases
ATGGCACAGGTAGACTATTTCTTGAAGATTGATGGCATAGACGGTGAGAGCCTGCAAAAAGGCCATGAAAAGGAGATCGA
AATCATGTCCTTTTCGTGGGGCGAATCGAACGCAGGTTCTTTTGCCGGAAACCTCGGGGGCGGCTCGGGCAAGGTGAGTA
TGCAGGATTTCCACTTCACCGTGCCGGTGAACAAGTCCTCGCCGAAGCTGTTTCTCGCCTGCGCCACCGGCGAGCACATC
AAGAGCGCGGTCCTGGTTTGCCGCAAGGCGGGCAAGACACAGCAGGAGTTCCTGAAGTGGAAGTTCACGGACCTGCTGAT
CTCGTCGTACAATACCGGCGGCTCGGGCGGTTCGGATGTGGTGCCGATCGATCAGGTCTCGTTCAACTTCACGAAGATCG
AAGTATCGTACGCACCGCAGAAGCAGGACGGTTCTCTGGACGCGGCGCTCCCGGCAGGCTACGACTTGAAGGCCGGCCAG
AAGGTCTAA

Upstream 100 bases:

>100_bases
GTTTCTTTGCGTCTGGTGGCGGAATTGCCCAAGGGCCGGGGCTAAGTCTCGCAGAAGTTTGGCTGTTTGCCGGTAACTCA
ATACAAACAGGAGGAAGAGA

Downstream 100 bases:

>100_bases
TCCAAAACACGCAGCGGGGATTAATTCATGACTGCCGGACCATTGTTTCACGCCGGCAAGCTCGATCAGGCGATACAGGC
GCTGGGCGCCGAACTCCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MAQVDYFLKIDGIDGESLQKGHEKEIEIMSFSWGESNAGSFAGNLGGGSGKVSMQDFHFTVPVNKSSPKLFLACATGEHI
KSAVLVCRKAGKTQQEFLKWKFTDLLISSYNTGGSGGSDVVPIDQVSFNFTKIEVSYAPQKQDGSLDAALPAGYDLKAGQ
KV

Sequences:

>Translated_162_residues
MAQVDYFLKIDGIDGESLQKGHEKEIEIMSFSWGESNAGSFAGNLGGGSGKVSMQDFHFTVPVNKSSPKLFLACATGEHI
KSAVLVCRKAGKTQQEFLKWKFTDLLISSYNTGGSGGSDVVPIDQVSFNFTKIEVSYAPQKQDGSLDAALPAGYDLKAGQ
KV
>Mature_161_residues
AQVDYFLKIDGIDGESLQKGHEKEIEIMSFSWGESNAGSFAGNLGGGSGKVSMQDFHFTVPVNKSSPKLFLACATGEHIK
SAVLVCRKAGKTQQEFLKWKFTDLLISSYNTGGSGGSDVVPIDQVSFNFTKIEVSYAPQKQDGSLDAALPAGYDLKAGQK
V

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17376; Mature: 17245

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQVDYFLKIDGIDGESLQKGHEKEIEIMSFSWGESNAGSFAGNLGGGSGKVSMQDFHFT
CCCEEEEEEEECCCCHHHHCCCCCEEEEEEEECCCCCCCCEECCCCCCCCEEEEEEEEEE
VPVNKSSPKLFLACATGEHIKSAVLVCRKAGKTQQEFLKWKFTDLLISSYNTGGSGGSDV
EECCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEECCCCCCCCCCCC
VPIDQVSFNFTKIEVSYAPQKQDGSLDAALPAGYDLKAGQKV
EEECCCEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCC
>Mature Secondary Structure 
AQVDYFLKIDGIDGESLQKGHEKEIEIMSFSWGESNAGSFAGNLGGGSGKVSMQDFHFT
CCEEEEEEEECCCCHHHHCCCCCEEEEEEEECCCCCCCCEECCCCCCCCEEEEEEEEEE
VPVNKSSPKLFLACATGEHIKSAVLVCRKAGKTQQEFLKWKFTDLLISSYNTGGSGGSDV
EECCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEECCCCCCCCCCCC
VPIDQVSFNFTKIEVSYAPQKQDGSLDAALPAGYDLKAGQKV
EEECCCEEEEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]