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The map label for this gene is 116516665

Identifier: 116516665

GI number: 116516665

Start: 1653175

End: 1653711

Strand: Direct

Name: 116516665

Synonym: SPD_1639

Alternate gene names: NA

Gene position: 1653175-1653711 (Clockwise)

Preceding gene: 116515548

Following gene: 116515575

Centisome position: 80.8

GC content: 42.46

Gene sequence:

>537_bases
ATGACTAACATTGACCGCCGTATCAGCAAAACCAAAAAAGCCATCTATCAAGCTTTTATACAACTTTTGAATGCTAAGGG
CTACGAGGCCACTACTGTTCAGGATATCATTGATCTCGCAGATGTGGGACGATCCACCTTTTACTGTCACTATGAGAGTA
AGGAGCTTCTTCTGGACCAGCTCTGCCGCTACCTCTTCCATCATCTTTTTGAAAGAGAGCAAGCCATTTCAACCGAGGAC
TACCTCGCCCACCTCTTTCTCCATTTTCATAAAAACCAAGACCATATCACCAGTCTGCTATTTTCCAAAAATGACTACTT
CCTCCGTCAACTCCATAAAGAGCTAGAACACCATGTCTATTCCGTGCTAGCTGATAATTTAAAAGAAGCCCACCCTAATC
TGCCTACTTCTTACCTCCAACACTTGGTCATGTCCAACTTTATCGAGACATTGACCTGGTGGCTCAAAAAAGGTCAAGAT
TTCACAGACCAGGAAGTTGTCCAATTTTATCTAGACCTTCTCATTCCTAAAAATTGA

Upstream 100 bases:

>100_bases
AACACCTTGTTCATTATCATTATCCACTAAAACTCAAAGAAAGGATAGAAGCAAAACGTCAGCTTTATTCAGTTCTGAAC
AATTTGCCTTAAGTGTCCAT

Downstream 100 bases:

>100_bases
ATATAGAGTAAAGCTTCAGTTGTCTTATTTCTAGGTTACTGAGTTTTTTATCTTTTCAACAACAAAAGAGGACCCGCCGA
TCCTCTTTTTCATACTATAA

Product: transcriptional regulator, TetR family protein

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator Tetr Family; AraC Family Transcriptional Regulator; Regulatory Protein TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MTNIDRRISKTKKAIYQAFIQLLNAKGYEATTVQDIIDLADVGRSTFYCHYESKELLLDQLCRYLFHHLFEREQAISTED
YLAHLFLHFHKNQDHITSLLFSKNDYFLRQLHKELEHHVYSVLADNLKEAHPNLPTSYLQHLVMSNFIETLTWWLKKGQD
FTDQEVVQFYLDLLIPKN

Sequences:

>Translated_178_residues
MTNIDRRISKTKKAIYQAFIQLLNAKGYEATTVQDIIDLADVGRSTFYCHYESKELLLDQLCRYLFHHLFEREQAISTED
YLAHLFLHFHKNQDHITSLLFSKNDYFLRQLHKELEHHVYSVLADNLKEAHPNLPTSYLQHLVMSNFIETLTWWLKKGQD
FTDQEVVQFYLDLLIPKN
>Mature_177_residues
TNIDRRISKTKKAIYQAFIQLLNAKGYEATTVQDIIDLADVGRSTFYCHYESKELLLDQLCRYLFHHLFEREQAISTEDY
LAHLFLHFHKNQDHITSLLFSKNDYFLRQLHKELEHHVYSVLADNLKEAHPNLPTSYLQHLVMSNFIETLTWWLKKGQDF
TDQEVVQFYLDLLIPKN

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21233; Mature: 21102

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNIDRRISKTKKAIYQAFIQLLNAKGYEATTVQDIIDLADVGRSTFYCHYESKELLLDQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH
LCRYLFHHLFEREQAISTEDYLAHLFLHFHKNQDHITSLLFSKNDYFLRQLHKELEHHVY
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SVLADNLKEAHPNLPTSYLQHLVMSNFIETLTWWLKKGQDFTDQEVVQFYLDLLIPKN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TNIDRRISKTKKAIYQAFIQLLNAKGYEATTVQDIIDLADVGRSTFYCHYESKELLLDQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH
LCRYLFHHLFEREQAISTEDYLAHLFLHFHKNQDHITSLLFSKNDYFLRQLHKELEHHVY
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
SVLADNLKEAHPNLPTSYLQHLVMSNFIETLTWWLKKGQDFTDQEVVQFYLDLLIPKN
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA