Click here to switch to the map view.

The map label for this gene is ypmR [H]

Identifier: 116494877

GI number: 116494877

Start: 1380080

End: 1380925

Strand: Direct

Name: ypmR [H]

Synonym: LSEI_1391

Alternate gene names: 116494877

Gene position: 1380080-1380925 (Clockwise)

Preceding gene: 116494876

Following gene: 116494878

Centisome position: 47.67

GC content: 45.39

Gene sequence:

>846_bases
ATGGCCAAGTTAAAAAGTATTCTTATTTCATTCGGCGTCATTTTGCTAGCCGGTATAGCGGCTTTTTTAAGCTGGCAAGT
ATTCGGCCCTGCCGCTGCGCCCAGTCAAGTCAAACTGACGGCTGATCAGCCGAAGCAACTCAAGCTGACGGCGGTTGGCG
ATTCGCTGACATACGGCGTTGGTGATGCCACGAATAACGGTGGTTTTGTTGGACTCACTCAGGCCGATTTGGAAGCTACC
GGCCAATATCAAGTCACGACGAAAAACTATGGTGTTAGTGGTAACACCAGCACCCAGATTCTTAGTCGCATCAATAAACA
GGCGAAGATTCGTACAGATTTGAAGCAAGCCAATATCATTACCGTGACGGCAGGCGGCAATGATCTGATGCATGTGTTGC
AGCAACATTTTCTTAGCTTGTCTGAAAAAGAGATCACTGCTGGTAGCACGGCTTTTCAGAAACATCTAACGACCTTACTC
ACAACTATTCGTAAGGAGAACGCAACGGCACCGATTTATGTTTTTGGCATCTATAATCCGTTTTATGTTTATTTTCCAAA
AATGACAGCGATGACTAATAGCGTGAGCGCGTGGAATCAGGCAACGCAAAAGACCTTGCAAGGCTTCCAACGTGTCTATT
ACATTGACATCGATAAGGTCCTATCAAATGGGGAAACTGTCGCCAACAAGGCTTCTGCAAAAGAGGCTTTGAAGGAAGCA
ACATCTGGAGATGGCAACCCGCTGATCTTTTCGCAAGATCATTTTCATCCTAATAATGCCGGTTATGCGCAAATGACTAA
ACAATTGATGACGAAACTAACAGCCACAAAGAAAGATTGGGAGTGA

Upstream 100 bases:

>100_bases
GTCAATGATCATTCAGACGGAGCGCCTTTGTTAATTTGTACAACGTCAAGTACAATAGCCTATTAATACCAGTCATTTGA
CCAGAAACACAGGAGGCACC

Downstream 100 bases:

>100_bases
TTAGGGTGACAGAAAAGAAACGGCAGCGCAAACAAAAATCGATCAGCTGGTCAATGATTAACTGGTGGAAATGGGCATTT
TTAATCCTGATTGGCCTTAT

Product: lysophospholipase L1 related esterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MAKLKSILISFGVILLAGIAAFLSWQVFGPAAAPSQVKLTADQPKQLKLTAVGDSLTYGVGDATNNGGFVGLTQADLEAT
GQYQVTTKNYGVSGNTSTQILSRINKQAKIRTDLKQANIITVTAGGNDLMHVLQQHFLSLSEKEITAGSTAFQKHLTTLL
TTIRKENATAPIYVFGIYNPFYVYFPKMTAMTNSVSAWNQATQKTLQGFQRVYYIDIDKVLSNGETVANKASAKEALKEA
TSGDGNPLIFSQDHFHPNNAGYAQMTKQLMTKLTATKKDWE

Sequences:

>Translated_281_residues
MAKLKSILISFGVILLAGIAAFLSWQVFGPAAAPSQVKLTADQPKQLKLTAVGDSLTYGVGDATNNGGFVGLTQADLEAT
GQYQVTTKNYGVSGNTSTQILSRINKQAKIRTDLKQANIITVTAGGNDLMHVLQQHFLSLSEKEITAGSTAFQKHLTTLL
TTIRKENATAPIYVFGIYNPFYVYFPKMTAMTNSVSAWNQATQKTLQGFQRVYYIDIDKVLSNGETVANKASAKEALKEA
TSGDGNPLIFSQDHFHPNNAGYAQMTKQLMTKLTATKKDWE
>Mature_280_residues
AKLKSILISFGVILLAGIAAFLSWQVFGPAAAPSQVKLTADQPKQLKLTAVGDSLTYGVGDATNNGGFVGLTQADLEATG
QYQVTTKNYGVSGNTSTQILSRINKQAKIRTDLKQANIITVTAGGNDLMHVLQQHFLSLSEKEITAGSTAFQKHLTTLLT
TIRKENATAPIYVFGIYNPFYVYFPKMTAMTNSVSAWNQATQKTLQGFQRVYYIDIDKVLSNGETVANKASAKEALKEAT
SGDGNPLIFSQDHFHPNNAGYAQMTKQLMTKLTATKKDWE

Specific function: Unknown

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087 [H]

Pfam domain/function: PF00657 Lipase_GDSL [H]

EC number: NA

Molecular weight: Translated: 30539; Mature: 30408

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKLKSILISFGVILLAGIAAFLSWQVFGPAAAPSQVKLTADQPKQLKLTAVGDSLTYGV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEECCCEEECC
GDATNNGGFVGLTQADLEATGQYQVTTKNYGVSGNTSTQILSRINKQAKIRTDLKQANII
CCCCCCCCEEEEEHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEE
TVTAGGNDLMHVLQQHFLSLSEKEITAGSTAFQKHLTTLLTTIRKENATAPIYVFGIYNP
EEECCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
FYVYFPKMTAMTNSVSAWNQATQKTLQGFQRVYYIDIDKVLSNGETVANKASAKEALKEA
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHCCCCHHHHHHHHHHHHHHH
TSGDGNPLIFSQDHFHPNNAGYAQMTKQLMTKLTATKKDWE
HCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AKLKSILISFGVILLAGIAAFLSWQVFGPAAAPSQVKLTADQPKQLKLTAVGDSLTYGV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEECCCEEECC
GDATNNGGFVGLTQADLEATGQYQVTTKNYGVSGNTSTQILSRINKQAKIRTDLKQANII
CCCCCCCCEEEEEHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEE
TVTAGGNDLMHVLQQHFLSLSEKEITAGSTAFQKHLTTLLTTIRKENATAPIYVFGIYNP
EEECCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
FYVYFPKMTAMTNSVSAWNQATQKTLQGFQRVYYIDIDKVLSNGETVANKASAKEALKEA
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHCCCCHHHHHHHHHHHHHHH
TSGDGNPLIFSQDHFHPNNAGYAQMTKQLMTKLTATKKDWE
HCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 3145906 [H]