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The map label for this gene is sufB [H]

Identifier: 116494679

GI number: 116494679

Start: 1165757

End: 1167193

Strand: Direct

Name: sufB [H]

Synonym: LSEI_1184

Alternate gene names: 116494679

Gene position: 1165757-1167193 (Clockwise)

Preceding gene: 116494678

Following gene: 116494681

Centisome position: 40.26

GC content: 46.76

Gene sequence:

>1437_bases
ATGACTGAGACAAAAAACACTAAAAACAATGAAACTGTCGCGGCAGATATCGACTTTTTGCCAGAAGACAATCCAGCAGA
TTTTAAGGATGATATCAAGCCGGTGTATTCTACAGGTCGGGGCTTAACCGAGGAAACGGTTCGCGCTATTTCTGCGGAGA
AGCATGAGCCTGACTGGATGCTCGATTATCGGCTGCGTGCTTATGCAACGTACAAAAGGCTGGCAATGCCGAATTTTGGT
CCAGATCTTTCCGATCTTGACTTGGACAACATGCTTTATTTTCAAAAGGCGACGGATCGAACCTATCGCGACTGGGATGA
CGTGCCTGACGCCATTAAAAATACGTTTGATCGGTTAGGCGTTCCGCAGGCTGAACGTAAATATTTGGCCGGCGCCAGCG
CCCAATACGAGTCTGAAGTGGTTTACCATAACATGCGGGATGAATTCGAAAAACTCGGCATTATTTTTATGGACATGGAC
TCAGCTTTGAAAGAGTATCCAGAGCTCGTGCATGATTATTTTGGCAAGCTGGTTAAACCTAGCGACAATAAATTTGCTGC
TTTGAATGGTGCTGTGTGGTCTGGCGGCAGTTTTATCTATGTGCCTAAAGGCGTGCAGACAGATGTGCCAATTCAAAGTT
ACTTCCGAATTAATGCCGAGAACACCGGTCAATTCGAGCGGACGCTGATCATCGTTGAGCCTGGCGCGCATGTTAACTAC
GTGGAAGGATGTACGGCTCCCAACTATTCCAGCGACAGTTTGCACGCGGCGGTTGTTGAAGTTTTCGTCAAAAATGACGC
TTACTGCCGCTATACGACGATTCAGAACTGGAGCAAGAATGTCTTCTCACTTGAAACCAAACGCGCACAGGCACTCGACA
ACGCCACTATGGAGTGGGTTGACGGCAACCTTGGCAGCAAAACTACGATGAAGTATCCTAGCGTGTATCTTGACGGTAAA
GGCGCTCGCGGTACGATGTTAAGTATCGCGGTCGCAGGTGAAGGCGTTGATCAGGATAATGGCGCACGAATGATTCATAA
TGCGCCAAACACCAGCAGTTCGATTGTCTCCAAGTCGATTGCCAAAGATGGCGGCGCGGTTGATTATCGCGGCACAGTTC
GCTTCACTAAAAAGGCAGACAATGCCTTTTGCCACGTAGAATGTGACACGATCTTGATGGATGAAAAAAGTTCAAGTGAT
ACAATTCCTTATAATGAAATCCATAATGCCACAGTGTCAATGGAACATGAAGCGAAGGTATCAAAGGTTTCCGAAGAACA
GTTGTACTACTTGATGAGCCGCGGTATTTCTGAAGCCAAGGCCACTGAAATGATTATCATGGGCTTTGTTGAGCCATTTA
CTAAAGAACTGCCGATGGAATATGCGGTTGAATTGAATCGTCTGATTGGTATGGAAATGGATGGGTCTGTAGGCTGA

Upstream 100 bases:

>100_bases
GCGGTTTTAAAAGGCGTCCACCAATTTCCTGCACGGATCAAATGTGCCACTTTGGCATGGAAAGCAGCGGCGCAAGTCTT
GACGCAGAAAGGTGAAGACC

Downstream 100 bases:

>100_bases
AATCGAGTTCTTATTTTAATGTCGATTTTTGAAGAAAAGCTGGCTAAATTGTCATCTGCAATCTGGAGGTTGCGGATAGA
CGTTTAGCCAGCTTTTTTTA

Product: Fe-S cluster assembly ABC-type transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MTETKNTKNNETVAADIDFLPEDNPADFKDDIKPVYSTGRGLTEETVRAISAEKHEPDWMLDYRLRAYATYKRLAMPNFG
PDLSDLDLDNMLYFQKATDRTYRDWDDVPDAIKNTFDRLGVPQAERKYLAGASAQYESEVVYHNMRDEFEKLGIIFMDMD
SALKEYPELVHDYFGKLVKPSDNKFAALNGAVWSGGSFIYVPKGVQTDVPIQSYFRINAENTGQFERTLIIVEPGAHVNY
VEGCTAPNYSSDSLHAAVVEVFVKNDAYCRYTTIQNWSKNVFSLETKRAQALDNATMEWVDGNLGSKTTMKYPSVYLDGK
GARGTMLSIAVAGEGVDQDNGARMIHNAPNTSSSIVSKSIAKDGGAVDYRGTVRFTKKADNAFCHVECDTILMDEKSSSD
TIPYNEIHNATVSMEHEAKVSKVSEEQLYYLMSRGISEAKATEMIIMGFVEPFTKELPMEYAVELNRLIGMEMDGSVG

Sequences:

>Translated_478_residues
MTETKNTKNNETVAADIDFLPEDNPADFKDDIKPVYSTGRGLTEETVRAISAEKHEPDWMLDYRLRAYATYKRLAMPNFG
PDLSDLDLDNMLYFQKATDRTYRDWDDVPDAIKNTFDRLGVPQAERKYLAGASAQYESEVVYHNMRDEFEKLGIIFMDMD
SALKEYPELVHDYFGKLVKPSDNKFAALNGAVWSGGSFIYVPKGVQTDVPIQSYFRINAENTGQFERTLIIVEPGAHVNY
VEGCTAPNYSSDSLHAAVVEVFVKNDAYCRYTTIQNWSKNVFSLETKRAQALDNATMEWVDGNLGSKTTMKYPSVYLDGK
GARGTMLSIAVAGEGVDQDNGARMIHNAPNTSSSIVSKSIAKDGGAVDYRGTVRFTKKADNAFCHVECDTILMDEKSSSD
TIPYNEIHNATVSMEHEAKVSKVSEEQLYYLMSRGISEAKATEMIIMGFVEPFTKELPMEYAVELNRLIGMEMDGSVG
>Mature_477_residues
TETKNTKNNETVAADIDFLPEDNPADFKDDIKPVYSTGRGLTEETVRAISAEKHEPDWMLDYRLRAYATYKRLAMPNFGP
DLSDLDLDNMLYFQKATDRTYRDWDDVPDAIKNTFDRLGVPQAERKYLAGASAQYESEVVYHNMRDEFEKLGIIFMDMDS
ALKEYPELVHDYFGKLVKPSDNKFAALNGAVWSGGSFIYVPKGVQTDVPIQSYFRINAENTGQFERTLIIVEPGAHVNYV
EGCTAPNYSSDSLHAAVVEVFVKNDAYCRYTTIQNWSKNVFSLETKRAQALDNATMEWVDGNLGSKTTMKYPSVYLDGKG
ARGTMLSIAVAGEGVDQDNGARMIHNAPNTSSSIVSKSIAKDGGAVDYRGTVRFTKKADNAFCHVECDTILMDEKSSSDT
IPYNEIHNATVSMEHEAKVSKVSEEQLYYLMSRGISEAKATEMIIMGFVEPFTKELPMEYAVELNRLIGMEMDGSVG

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=479, Percent_Identity=38.4133611691023, Blast_Score=335, Evalue=3e-93,
Organism=Escherichia coli, GI1787971, Length=154, Percent_Identity=27.9220779220779, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 53537; Mature: 53406

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETKNTKNNETVAADIDFLPEDNPADFKDDIKPVYSTGRGLTEETVRAISAEKHEPDWM
CCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEE
LDYRLRAYATYKRLAMPNFGPDLSDLDLDNMLYFQKATDRTYRDWDDVPDAIKNTFDRLG
EHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
VPQAERKYLAGASAQYESEVVYHNMRDEFEKLGIIFMDMDSALKEYPELVHDYFGKLVKP
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHCCCCC
SDNKFAALNGAVWSGGSFIYVPKGVQTDVPIQSYFRINAENTGQFERTLIIVEPGAHVNY
CCCCEEEECCEEECCCCEEEECCCCCCCCCHHHEEEECCCCCCCEEEEEEEECCCCCEEE
VEGCTAPNYSSDSLHAAVVEVFVKNDAYCRYTTIQNWSKNVFSLETKRAQALDNATMEWV
ECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEHHHHHHHHHCCCCEEE
DGNLGSKTTMKYPSVYLDGKGARGTMLSIAVAGEGVDQDNGARMIHNAPNTSSSIVSKSI
CCCCCCCEEEECCEEEECCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHH
AKDGGAVDYRGTVRFTKKADNAFCHVECDTILMDEKSSSDTIPYNEIHNATVSMEHEAKV
HCCCCCEEEECEEEEEECCCCCEEEEEECEEEEECCCCCCCCCHHHHCCCEEEECHHHHH
SKVSEEQLYYLMSRGISEAKATEMIIMGFVEPFTKELPMEYAVELNRLIGMEMDGSVG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TETKNTKNNETVAADIDFLPEDNPADFKDDIKPVYSTGRGLTEETVRAISAEKHEPDWM
CCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEE
LDYRLRAYATYKRLAMPNFGPDLSDLDLDNMLYFQKATDRTYRDWDDVPDAIKNTFDRLG
EHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
VPQAERKYLAGASAQYESEVVYHNMRDEFEKLGIIFMDMDSALKEYPELVHDYFGKLVKP
CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHCCCCC
SDNKFAALNGAVWSGGSFIYVPKGVQTDVPIQSYFRINAENTGQFERTLIIVEPGAHVNY
CCCCEEEECCEEECCCCEEEECCCCCCCCCHHHEEEECCCCCCCEEEEEEEECCCCCEEE
VEGCTAPNYSSDSLHAAVVEVFVKNDAYCRYTTIQNWSKNVFSLETKRAQALDNATMEWV
ECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEHHHHHHHHHCCCCEEE
DGNLGSKTTMKYPSVYLDGKGARGTMLSIAVAGEGVDQDNGARMIHNAPNTSSSIVSKSI
CCCCCCCEEEECCEEEECCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHH
AKDGGAVDYRGTVRFTKKADNAFCHVECDTILMDEKSSSDTIPYNEIHNATVSMEHEAKV
HCCCCCEEEECEEEEEECCCCCEEEEEECEEEEECCCCCCCCCHHHHCCCEEEECHHHHH
SKVSEEQLYYLMSRGISEAKATEMIIMGFVEPFTKELPMEYAVELNRLIGMEMDGSVG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]