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The map label for this gene is nifU [H]

Identifier: 116494678

GI number: 116494678

Start: 1165318

End: 1165764

Strand: Direct

Name: nifU [H]

Synonym: LSEI_1183

Alternate gene names: 116494678

Gene position: 1165318-1165764 (Clockwise)

Preceding gene: 116494677

Following gene: 116494679

Centisome position: 40.25

GC content: 49.44

Gene sequence:

>447_bases
ATGGCATTGACTAAGCTGGACCAGATGTATCGGGCGGTCATTTTGGATGAAGCACAACACCCGCGACATCACGGGGTTTT
GCCAGCTTTTGACCATGAAATTACGGTTCGCAATCCAAGTTGCGGTGATGTCTTGCATCTTCAAATCAAAGAGGATGCCG
GCCGGGTAACAGACGTGGCCTTCTCTGGCAGTGGCTGTACGATTTCTCAAGCCAGTGCTAGCCTGATGACGGAACAGATC
ATTGGCAAAACGCCAGCAGACATTGAACAAATGGTCGAAGCGTTTTCTGATTTGATCATTAACGGGGATGTGCCAAACGC
TGATATTTTAGGCGATGCAGCGGTTTTAAAAGGCGTCCACCAATTTCCTGCACGGATCAAATGTGCCACTTTGGCATGGA
AAGCAGCGGCGCAAGTCTTGACGCAGAAAGGTGAAGACCATGACTGA

Upstream 100 bases:

>100_bases
GGGGTGCCAGCTACGGTTCGTGCTAGTTTCGGCGTTTACAACAATGCTGACGATGTTGAACGATTGATTCAGGCAGTTCA
GGCGGCAAGGAGGTATTTCC

Downstream 100 bases:

>100_bases
GACAAAAAACACTAAAAACAATGAAACTGTCGCGGCAGATATCGACTTTTTGCCAGAAGACAATCCAGCAGATTTTAAGG
ATGATATCAAGCCGGTGTAT

Product: Fe-S cluster formation protein, NifU-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MALTKLDQMYRAVILDEAQHPRHHGVLPAFDHEITVRNPSCGDVLHLQIKEDAGRVTDVAFSGSGCTISQASASLMTEQI
IGKTPADIEQMVEAFSDLIINGDVPNADILGDAAVLKGVHQFPARIKCATLAWKAAAQVLTQKGEDHD

Sequences:

>Translated_148_residues
MALTKLDQMYRAVILDEAQHPRHHGVLPAFDHEITVRNPSCGDVLHLQIKEDAGRVTDVAFSGSGCTISQASASLMTEQI
IGKTPADIEQMVEAFSDLIINGDVPNADILGDAAVLKGVHQFPARIKCATLAWKAAAQVLTQKGEDHD
>Mature_147_residues
ALTKLDQMYRAVILDEAQHPRHHGVLPAFDHEITVRNPSCGDVLHLQIKEDAGRVTDVAFSGSGCTISQASASLMTEQII
GKTPADIEQMVEAFSDLIINGDVPNADILGDAAVLKGVHQFPARIKCATLAWKAAAQVLTQKGEDHD

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 15939; Mature: 15808

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTKLDQMYRAVILDEAQHPRHHGVLPAFDHEITVRNPSCGDVLHLQIKEDAGRVTDVA
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCEEEEE
FSGSGCTISQASASLMTEQIIGKTPADIEQMVEAFSDLIINGDVPNADILGDAAVLKGVH
ECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCCHHCCCHHHHHHHH
QFPARIKCATLAWKAAAQVLTQKGEDHD
HCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ALTKLDQMYRAVILDEAQHPRHHGVLPAFDHEITVRNPSCGDVLHLQIKEDAGRVTDVA
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCEEEEE
FSGSGCTISQASASLMTEQIIGKTPADIEQMVEAFSDLIINGDVPNADILGDAAVLKGVH
ECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCCHHCCCHHHHHHHH
QFPARIKCATLAWKAAAQVLTQKGEDHD
HCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]