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The map label for this gene is yfkH [H]

Identifier: 116494587

GI number: 116494587

Start: 1071290

End: 1072297

Strand: Direct

Name: yfkH [H]

Synonym: LSEI_1086

Alternate gene names: 116494587

Gene position: 1071290-1072297 (Clockwise)

Preceding gene: 116494586

Following gene: 116494589

Centisome position: 37.0

GC content: 48.41

Gene sequence:

>1008_bases
ATGGCTCGCAAACAACATCAAAAAAAGCCGCCGCTGCTTTCCGCCGAACAAGAAGTCGCGATTCAATCCGGGCGTGCAGC
ATTGGCAGATTTGGCGTTGCCACGCCGCACCAAAATGCGGGTGTTTGTTAAACTTGCCATCAATCGGATCACCGAATCGA
ACATCGGCCAAAGTGCTGCTGCCTTGGCGTACTATACCTTGCTGTCCTTATTCCCATTGATTCTGTTTGTCGCCAATGCG
TTGCCTTATTTTGGCTTAACATACAAAGGCCTTGCTGCCTATTTGACACAGGCAATCCCATCCAATGTCATGAATTGGTT
GGACCCAGTGATCGCCAATCTGTTGGATTCCAGCAGTGGCGGTTTGCTGGGAATTGGGGCGGTTGCGACTTTGTGGGCGG
CCAGTTTAGGCGTGAATGGTTTGAAAATGGGCTTCAATCAAATTTACGGCGTCGAGTCATCGCAAAATTTTATTATTCAA
CGCTTATTATCGATGCTCATGACCTTCACACTCATCATTGTGATGGGCGCCATTCTGATTGTTTTCGCATTTGGCCGCCA
GTTTCTGGAATGGCTGATCCCACTGCTTCGTCTCAACGATGACTGGCTGCGAACATTTAATACCCTACGTTGGCCAGTGA
CGATTACGGCGCTTTTTGTCATTATTATGTTTTTAAATTATTTTCTGCCGAACGTCAAAATCCGGATGTGGACAGTCTTA
CCAGGTACCGCCTTTACGGTCGCCGGTTGGCTGTTAATTGCCCAGGCGTTTTCCTTATACATGAAATATTTTGGGACACG
ATATCTGTCCTATGGCACGATTGGCACCTTTATCGCGATCATGTTATGGCTTAACTTCTCCGCACTGGTGCTGTTGTGGG
GCGCCGTCATCAATGCACTCACCGCTGAGTATTTCATTGGTCGACTACACGGCAGTAAGGGGAAAGTACACGACTTCGTC
AAACGCCGCGTGCGGACACCACACGAAGAAAAAGAAGCGAAAAGCTAG

Upstream 100 bases:

>100_bases
CTGATGACGCTCACTCTGGCAAAATAAAGTTAAGACGCTAATCACCTAACTTAATGACATGCCTGAAGAGCAGGGCGTCA
CAGAAAGGAGACAAGTGATT

Downstream 100 bases:

>100_bases
TCATTGAGTGAGCAACCATGGCTGAGAGCAGCAAAAAAGGACTTGCGTTCATCTGAGAGCGCAAGTCCTTTTGCTTTAAA
CGGTTTTATTGCAATGCCTG

Product: ribonuclease BN-like family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MARKQHQKKPPLLSAEQEVAIQSGRAALADLALPRRTKMRVFVKLAINRITESNIGQSAAALAYYTLLSLFPLILFVANA
LPYFGLTYKGLAAYLTQAIPSNVMNWLDPVIANLLDSSSGGLLGIGAVATLWAASLGVNGLKMGFNQIYGVESSQNFIIQ
RLLSMLMTFTLIIVMGAILIVFAFGRQFLEWLIPLLRLNDDWLRTFNTLRWPVTITALFVIIMFLNYFLPNVKIRMWTVL
PGTAFTVAGWLLIAQAFSLYMKYFGTRYLSYGTIGTFIAIMLWLNFSALVLLWGAVINALTAEYFIGRLHGSKGKVHDFV
KRRVRTPHEEKEAKS

Sequences:

>Translated_335_residues
MARKQHQKKPPLLSAEQEVAIQSGRAALADLALPRRTKMRVFVKLAINRITESNIGQSAAALAYYTLLSLFPLILFVANA
LPYFGLTYKGLAAYLTQAIPSNVMNWLDPVIANLLDSSSGGLLGIGAVATLWAASLGVNGLKMGFNQIYGVESSQNFIIQ
RLLSMLMTFTLIIVMGAILIVFAFGRQFLEWLIPLLRLNDDWLRTFNTLRWPVTITALFVIIMFLNYFLPNVKIRMWTVL
PGTAFTVAGWLLIAQAFSLYMKYFGTRYLSYGTIGTFIAIMLWLNFSALVLLWGAVINALTAEYFIGRLHGSKGKVHDFV
KRRVRTPHEEKEAKS
>Mature_334_residues
ARKQHQKKPPLLSAEQEVAIQSGRAALADLALPRRTKMRVFVKLAINRITESNIGQSAAALAYYTLLSLFPLILFVANAL
PYFGLTYKGLAAYLTQAIPSNVMNWLDPVIANLLDSSSGGLLGIGAVATLWAASLGVNGLKMGFNQIYGVESSQNFIIQR
LLSMLMTFTLIIVMGAILIVFAFGRQFLEWLIPLLRLNDDWLRTFNTLRWPVTITALFVIIMFLNYFLPNVKIRMWTVLP
GTAFTVAGWLLIAQAFSLYMKYFGTRYLSYGTIGTFIAIMLWLNFSALVLLWGAVINALTAEYFIGRLHGSKGKVHDFVK
RRVRTPHEEKEAKS

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 37508; Mature: 37377

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKQHQKKPPLLSAEQEVAIQSGRAALADLALPRRTKMRVFVKLAINRITESNIGQSAA
CCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHH
ALAYYTLLSLFPLILFVANALPYFGLTYKGLAAYLTQAIPSNVMNWLDPVIANLLDSSSG
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GLLGIGAVATLWAASLGVNGLKMGFNQIYGVESSQNFIIQRLLSMLMTFTLIIVMGAILI
CEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VFAFGRQFLEWLIPLLRLNDDWLRTFNTLRWPVTITALFVIIMFLNYFLPNVKIRMWTVL
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
PGTAFTVAGWLLIAQAFSLYMKYFGTRYLSYGTIGTFIAIMLWLNFSALVLLWGAVINAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAEYFIGRLHGSKGKVHDFVKRRVRTPHEEKEAKS
HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ARKQHQKKPPLLSAEQEVAIQSGRAALADLALPRRTKMRVFVKLAINRITESNIGQSAA
CCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHH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HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]