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The map label for this gene is whiA

Identifier: 116494468

GI number: 116494468

Start: 943668

End: 944615

Strand: Direct

Name: whiA

Synonym: LSEI_0961

Alternate gene names: 116494468

Gene position: 943668-944615 (Clockwise)

Preceding gene: 116494467

Following gene: 116494469

Centisome position: 32.59

GC content: 43.88

Gene sequence:

>948_bases
ATGGCAAGTTTCGCCAGTCTGGTGAAAAAAGAACTGACACAGCTCGAGGTACATCCAGAACATGCTAAGGCTGAATTGTC
TGCTTTGATTCGTATGAACGGCAGCCTGACACTGATGGCTCATCGTTTTGTGTTAAATATTCAAACCGAAAATCCGGCTA
TTGCACGTCGGATTTATAGCTTGATTCGCCAAGTCTATCATCACGAAGCTAATCTGGTTGTTCACCGTAAGATGAAGCTC
AAGAAGAATTATCAATACATTGTGCGGCTAACAGAAGGCGTCAATGACATCTTGTCGGATCTATCAATTTTAGATCCGGA
TACCATGGCGATTTCAACAACCGTTCCAGCTTCGGTGTTGAAGGAACCGCAGCGGATGCGTTCTTATTTACGCGGTGCCT
TTTTGGCCAGTGGTTCAGTGAATAACCCGGAAACCTCGCGTTATCATCTGGAAATCTATTCTTTATACGATAATCACAAT
GCTGGTATTTTGAAAATGATGAATCATTTTAATCTGAACGCTCGCACCGTAGAACGGCGAAGCGGCTACATTGTTTACCT
CAAGGAAGCAGAAAAGATTGCCGATTTCTTGCAGGTTATTGGGGCCACGAATGCCATGCTGAAGTTTGAAGATGTTCGGA
TCATGCGGGATATGCGGAACTCGGTGAATCGATTAGTTAACTGTGAAAATGCAAATATGAATAAAACGATTGACGCTGCA
CAGAAGCAGATTGAGAATATTAACTATTTAAAGAACCATGTTGGGCTAGATAACTTACCGGCCAAATTGCGGGAAATTGC
AGTTTTACGCTTAGCACATCCTGACGTCTCGCTTCAAGAGCTTGGAGCGATGATGCCGAGCGGCCAAATTTCAAAGTCTG
GGGTCAATCACCGGTTGCGGAAATTGAATCAGATTGCTGAAGGGTATCAACAACCAGAAGACGCTTGA

Upstream 100 bases:

>100_bases
AAGTTGCGCGATCATGGGGTCTTTCATGATGGTGATAAAGTCGCCAAGGAGATTTTAAACTTGGCCTTTCAGGTCAGCGG
CAAAACCCGGAGGTGAGGGT

Downstream 100 bases:

>100_bases
GCACTAATGCGAAGTGGGTTGCGTTCATCATAATCGGGTGTTGACAATCAACAAATCAATCCCTTTGTTTCCTCAAGCTA
ATCGTGTACAATGTAACCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MASFASLVKKELTQLEVHPEHAKAELSALIRMNGSLTLMAHRFVLNIQTENPAIARRIYSLIRQVYHHEANLVVHRKMKL
KKNYQYIVRLTEGVNDILSDLSILDPDTMAISTTVPASVLKEPQRMRSYLRGAFLASGSVNNPETSRYHLEIYSLYDNHN
AGILKMMNHFNLNARTVERRSGYIVYLKEAEKIADFLQVIGATNAMLKFEDVRIMRDMRNSVNRLVNCENANMNKTIDAA
QKQIENINYLKNHVGLDNLPAKLREIAVLRLAHPDVSLQELGAMMPSGQISKSGVNHRLRKLNQIAEGYQQPEDA

Sequences:

>Translated_315_residues
MASFASLVKKELTQLEVHPEHAKAELSALIRMNGSLTLMAHRFVLNIQTENPAIARRIYSLIRQVYHHEANLVVHRKMKL
KKNYQYIVRLTEGVNDILSDLSILDPDTMAISTTVPASVLKEPQRMRSYLRGAFLASGSVNNPETSRYHLEIYSLYDNHN
AGILKMMNHFNLNARTVERRSGYIVYLKEAEKIADFLQVIGATNAMLKFEDVRIMRDMRNSVNRLVNCENANMNKTIDAA
QKQIENINYLKNHVGLDNLPAKLREIAVLRLAHPDVSLQELGAMMPSGQISKSGVNHRLRKLNQIAEGYQQPEDA
>Mature_314_residues
ASFASLVKKELTQLEVHPEHAKAELSALIRMNGSLTLMAHRFVLNIQTENPAIARRIYSLIRQVYHHEANLVVHRKMKLK
KNYQYIVRLTEGVNDILSDLSILDPDTMAISTTVPASVLKEPQRMRSYLRGAFLASGSVNNPETSRYHLEIYSLYDNHNA
GILKMMNHFNLNARTVERRSGYIVYLKEAEKIADFLQVIGATNAMLKFEDVRIMRDMRNSVNRLVNCENANMNKTIDAAQ
KQIENINYLKNHVGLDNLPAKLREIAVLRLAHPDVSLQELGAMMPSGQISKSGVNHRLRKLNQIAEGYQQPEDA

Specific function: May be required for sporulation

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): WHIA_LACC3 (Q03AL2)

Other databases:

- EMBL:   CP000423
- RefSeq:   YP_806202.1
- STRING:   Q03AL2
- GeneID:   4419202
- GenomeReviews:   CP000423_GR
- KEGG:   lca:LSEI_0961
- eggNOG:   COG1481
- HOGENOM:   HBG485718
- OMA:   LERKKGY
- ProtClustDB:   CLSK2310893
- BioCyc:   LCAS321967:LSEI_0961-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_01420
- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478
- TIGRFAMs:   TIGR00647

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N

EC number: NA

Molecular weight: Translated: 35816; Mature: 35685

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFASLVKKELTQLEVHPEHAKAELSALIRMNGSLTLMAHRFVLNIQTENPAIARRIYS
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCHHHHHHHHH
LIRQVYHHEANLVVHRKMKLKKNYQYIVRLTEGVNDILSDLSILDPDTMAISTTVPASVL
HHHHHHHCCCCEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
KEPQRMRSYLRGAFLASGSVNNPETSRYHLEIYSLYDNHNAGILKMMNHFNLNARTVERR
CCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHCCCCHHEECCC
SGYIVYLKEAEKIADFLQVIGATNAMLKFEDVRIMRDMRNSVNRLVNCENANMNKTIDAA
CCEEEEEHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
QKQIENINYLKNHVGLDNLPAKLREIAVLRLAHPDVSLQELGAMMPSGQISKSGVNHRLR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
KLNQIAEGYQQPEDA
HHHHHHHHHCCCCCC
>Mature Secondary Structure 
ASFASLVKKELTQLEVHPEHAKAELSALIRMNGSLTLMAHRFVLNIQTENPAIARRIYS
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCHHHHHHHHH
LIRQVYHHEANLVVHRKMKLKKNYQYIVRLTEGVNDILSDLSILDPDTMAISTTVPASVL
HHHHHHHCCCCEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHH
KEPQRMRSYLRGAFLASGSVNNPETSRYHLEIYSLYDNHNAGILKMMNHFNLNARTVERR
CCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHCCCCHHEECCC
SGYIVYLKEAEKIADFLQVIGATNAMLKFEDVRIMRDMRNSVNRLVNCENANMNKTIDAA
CCEEEEEHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
QKQIENINYLKNHVGLDNLPAKLREIAVLRLAHPDVSLQELGAMMPSGQISKSGVNHRLR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
KLNQIAEGYQQPEDA
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA