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The map label for this gene is ymfF [H]

Identifier: 116494424

GI number: 116494424

Start: 893316

End: 894578

Strand: Direct

Name: ymfF [H]

Synonym: LSEI_0917

Alternate gene names: 116494424

Gene position: 893316-894578 (Clockwise)

Preceding gene: 116494423

Following gene: 116494425

Centisome position: 30.85

GC content: 48.85

Gene sequence:

>1263_bases
ATGCGAAAAGAAATGAAACCGGGTGTTTGGTTGATTGTCTTGCCGACAACGCAATTTAAAACCACCCGCATCAATGTGCA
ATTTTTAGCACCGTTGCAACGGGCAACAGTGACTAAACGAACATTATTAACAAGCCTGTTAGAAACGAATAGCGCTGTCT
ATCCGACGCAAGCAGCTTTGTCAGCACATCTCGAGTCGCTCTATGGCGCTAATTTCAGTATTGGCGTGGCCCGTGAAGGC
AAGCTGCATCGAATTGGCGTGACGATGAGTACCGTGGATGATCGGTTTACCGATACGCCTTTATTGCCTCAAGCAGCGGC
CTTCTTACGCACCATCTTGTTTGAACCCAACATGCAGGCGGGTAGTTTTGACGAAGCCACTTTTGCGCGGGAAAAGGAGA
ATTTGGATCATTATTTAGCCAGTCTAGATGATGATCGCCAAACCCAAGCGGCGCTGGGAGTGCAGCAACTATATTTTGGA
GCCGATCAGGATCAGGCTATTCCGAGTTTTGGGACGCGGGAAGATCTTGCATCGCTGACGGCGTCCAGTTTGGCTGCTTA
CTATCAAGAAATGATGCAGCATGATCAGGTCGTCATCACGGTGTTAGGAGATGTTGATCCTGAGCAAGTGGCAGCATTAT
TTGCTGATTGGCCACTTGATGCTCGGTCACAAACCGTACCAGCAGTGGCGTTTGATTTGCCGACGCATCCAGATGTGCTG
ACCCAAACAACCAAGGTGAATGCGCAACAGGCCAAGTTTGACTTGGCTTATCATGTTGAAACTGATTTGATGGGGCCCAA
ATATGCAGCAACATTAGTGGCAGAGGAATTATTTGGCGGCTCGAGCTTGTCACTTCTATTCACCAATGTCCGCGAGAAGG
CTAGTTTGGCTTATTATGCGAGCTCCATGTTCGATGCTTTTCGCGGCTTGATGCTGGTTCAAACCGGAATTGAAGGAAAA
GATCGTCAGCAAGTTGCTGATCTTATTCGTGATCAGTTGGCCGCAGTGGTCAATGGCGATTTTTCTGACGCCCTATTGAA
GGCCGTGAAGGACGGCATTTTGGATCATCAGCGTGCCGCCTATGACAGCCCACGGTTTTTGACAAATCAGGCGTTGTATC
AGTTGTTAGTACCAGATGCGCCACAGAATTTTGATGAGTTTGCTCAGCGGATTAAGGCGGTTGATCGCCAAGCGGTTCAA
CAGGCCGCCGCAGATATGAAATTGCAGGCCACCTATTTCTTGACTGGGGAGGATAGCGAATGA

Upstream 100 bases:

>100_bases
AAGCCAATCAAATTGTTGGGCCAAGTGAAGGCAGCAAACCGCGCAAAGTCTTTGTGACGCCAGAACAAGTAACGAATGGT
ACGCCATCATAAGGAGTTTT

Downstream 100 bases:

>100_bases
AGACACAGTATTTTAGTGATGTCGATGAAACGGTGATCACGACCACGCTATCGAACGGGCTGCGATTGCAAGTTGTGCCT
CGCCCCGCGTATCACAAAAG

Product: Zn-dependent peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MRKEMKPGVWLIVLPTTQFKTTRINVQFLAPLQRATVTKRTLLTSLLETNSAVYPTQAALSAHLESLYGANFSIGVAREG
KLHRIGVTMSTVDDRFTDTPLLPQAAAFLRTILFEPNMQAGSFDEATFAREKENLDHYLASLDDDRQTQAALGVQQLYFG
ADQDQAIPSFGTREDLASLTASSLAAYYQEMMQHDQVVITVLGDVDPEQVAALFADWPLDARSQTVPAVAFDLPTHPDVL
TQTTKVNAQQAKFDLAYHVETDLMGPKYAATLVAEELFGGSSLSLLFTNVREKASLAYYASSMFDAFRGLMLVQTGIEGK
DRQQVADLIRDQLAAVVNGDFSDALLKAVKDGILDHQRAAYDSPRFLTNQALYQLLVPDAPQNFDEFAQRIKAVDRQAVQ
QAAADMKLQATYFLTGEDSE

Sequences:

>Translated_420_residues
MRKEMKPGVWLIVLPTTQFKTTRINVQFLAPLQRATVTKRTLLTSLLETNSAVYPTQAALSAHLESLYGANFSIGVAREG
KLHRIGVTMSTVDDRFTDTPLLPQAAAFLRTILFEPNMQAGSFDEATFAREKENLDHYLASLDDDRQTQAALGVQQLYFG
ADQDQAIPSFGTREDLASLTASSLAAYYQEMMQHDQVVITVLGDVDPEQVAALFADWPLDARSQTVPAVAFDLPTHPDVL
TQTTKVNAQQAKFDLAYHVETDLMGPKYAATLVAEELFGGSSLSLLFTNVREKASLAYYASSMFDAFRGLMLVQTGIEGK
DRQQVADLIRDQLAAVVNGDFSDALLKAVKDGILDHQRAAYDSPRFLTNQALYQLLVPDAPQNFDEFAQRIKAVDRQAVQ
QAAADMKLQATYFLTGEDSE
>Mature_420_residues
MRKEMKPGVWLIVLPTTQFKTTRINVQFLAPLQRATVTKRTLLTSLLETNSAVYPTQAALSAHLESLYGANFSIGVAREG
KLHRIGVTMSTVDDRFTDTPLLPQAAAFLRTILFEPNMQAGSFDEATFAREKENLDHYLASLDDDRQTQAALGVQQLYFG
ADQDQAIPSFGTREDLASLTASSLAAYYQEMMQHDQVVITVLGDVDPEQVAALFADWPLDARSQTVPAVAFDLPTHPDVL
TQTTKVNAQQAKFDLAYHVETDLMGPKYAATLVAEELFGGSSLSLLFTNVREKASLAYYASSMFDAFRGLMLVQTGIEGK
DRQQVADLIRDQLAAVVNGDFSDALLKAVKDGILDHQRAAYDSPRFLTNQALYQLLVPDAPQNFDEFAQRIKAVDRQAVQ
QAAADMKLQATYFLTGEDSE

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR007863 [H]

Pfam domain/function: PF05193 Peptidase_M16_C [H]

EC number: NA

Molecular weight: Translated: 46377; Mature: 46377

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKEMKPGVWLIVLPTTQFKTTRINVQFLAPLQRATVTKRTLLTSLLETNSAVYPTQAAL
CCCCCCCCEEEEEECCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SAHLESLYGANFSIGVAREGKLHRIGVTMSTVDDRFTDTPLLPQAAAFLRTILFEPNMQA
HHHHHHHHCCCCEEEEECCCCEEEEEEEEEHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
GSFDEATFAREKENLDHYLASLDDDRQTQAALGVQQLYFGADQDQAIPSFGTREDLASLT
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
ASSLAAYYQEMMQHDQVVITVLGDVDPEQVAALFADWPLDARSQTVPAVAFDLPTHPDVL
HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHH
TQTTKVNAQQAKFDLAYHVETDLMGPKYAATLVAEELFGGSSLSLLFTNVREKASLAYYA
HHHHCCCHHHHHEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
SSMFDAFRGLMLVQTGIEGKDRQQVADLIRDQLAAVVNGDFSDALLKAVKDGILDHQRAA
HHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
YDSPRFLTNQALYQLLVPDAPQNFDEFAQRIKAVDRQAVQQAAADMKLQATYFLTGEDSE
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCC
>Mature Secondary Structure
MRKEMKPGVWLIVLPTTQFKTTRINVQFLAPLQRATVTKRTLLTSLLETNSAVYPTQAAL
CCCCCCCCEEEEEECCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
SAHLESLYGANFSIGVAREGKLHRIGVTMSTVDDRFTDTPLLPQAAAFLRTILFEPNMQA
HHHHHHHHCCCCEEEEECCCCEEEEEEEEEHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
GSFDEATFAREKENLDHYLASLDDDRQTQAALGVQQLYFGADQDQAIPSFGTREDLASLT
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
ASSLAAYYQEMMQHDQVVITVLGDVDPEQVAALFADWPLDARSQTVPAVAFDLPTHPDVL
HHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHH
TQTTKVNAQQAKFDLAYHVETDLMGPKYAATLVAEELFGGSSLSLLFTNVREKASLAYYA
HHHHCCCHHHHHEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
SSMFDAFRGLMLVQTGIEGKDRQQVADLIRDQLAAVVNGDFSDALLKAVKDGILDHQRAA
HHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
YDSPRFLTNQALYQLLVPDAPQNFDEFAQRIKAVDRQAVQQAAADMKLQATYFLTGEDSE
CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]