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The map label for this gene is ymfH [H]

Identifier: 116494425

GI number: 116494425

Start: 894575

End: 895867

Strand: Direct

Name: ymfH [H]

Synonym: LSEI_0918

Alternate gene names: 116494425

Gene position: 894575-895867 (Clockwise)

Preceding gene: 116494424

Following gene: 116494426

Centisome position: 30.9

GC content: 47.02

Gene sequence:

>1293_bases
ATGAAGACACAGTATTTTAGTGATGTCGATGAAACGGTGATCACGACCACGCTATCGAACGGGCTGCGATTGCAAGTTGT
GCCTCGCCCCGCGTATCACAAAAGCTATGCGATCATGACAACCGATTATGGTTCGATTGATACGCAATTTGCACCAGATG
GCAAACAGATGGTGACTTATCCGGCCGGAATTGCCCACTTTCTTGAGCACAAGCTATTTGAAAAGGAAGATCATGATGCC
TTTGATCTTTTTGGTGAAACTGGGGCATCAGCAAATGCATTCACGAGTGCGACCAAAACGAGTTTTTTATTCTCTACAAC
AACGCAGCTGACGAAGAACTTACAGATTTTACTGGATTTTGTGCAAACGCCATTTTTTTCTAAGGCATCAGTTGCTAAGG
AGCAAGGCATTATCGGGTCAGAAATTCAAATGTATCAGGATGATCCGGGGTGGCGCGGTTATGCCGGTTTGTTAGAAAAC
CTTTTTCCAAACCATCCGGCGCATGTTGATGTGGCTGGCACAGTGGCAAGTATTGCCCAAATCACACCGGAAATGTTGTA
TACGATTCATCGGGTTTTCTATCAACCAAGCAACATGACGTTGATTGTTGTGGGAAATATTGACGCTGATGCCATTATGG
CTTTTGTTGCGGCTAATCAAGCAGCCAAACAGTTTCCGGCGCCACAGGCGATTGTGCGTGGCGTTCACGCGGATTTGCAG
ACGGATGATATCGTGCCATATCGCCAGTTGGAGATGCCAATTAGTCGCCCAAAGACGCTGGTCGGCATCAAAGGGCAGGT
TGCGATTCCTATGACGGCTGAGGGCTGGCGGTACCAATTAACTATTCGGCTCTTACTAGAAGTTCTGTTTGGCGATTCTT
CCCAGTTATATCAAGATTGGTATGACCGAGGATTGATTGATGACTCATTTGATTTTGATTTTACGAACCAGCGCAGCTTT
AGTTATGGCTTGGTCGGTGGTGATACCGATGATCCGCACGCATTAAGTGATGCGATCAAACATGTGTTGCTAAACGCAGC
GACGCAGCCGGATTTGACCCGCGACCGGGTTGCTCTAATTAAGCGGGCGTCACTGGGTAAATACTACGCTGGCCTTAACG
GACTGAATGGTGTGGCCAATCAGCTAAGTGCGTTGAGTTTTGGCCAGGCGAGTTTGTTTGATTTCCCCGAGATTTTGAGC
AGCATCACGCTAGCGGATTTACAAGCTATGATTGATCAGGTTTTTCAGGCGAAAGCATTGACCGTTTTAGATATGATTCC
GGAGGCAGATTGA

Upstream 100 bases:

>100_bases
TTGCTCAGCGGATTAAGGCGGTTGATCGCCAAGCGGTTCAACAGGCCGCCGCAGATATGAAATTGCAGGCCACCTATTTC
TTGACTGGGGAGGATAGCGA

Downstream 100 bases:

>100_bases
TGCGAGCAGCTTTGATTGTTGGTGCGTCGGGTGACATTGGCCAAGCGGTGGCTAAAAAGTTGGCCCACGATGGCTGGTCA
TTGTACCTGCACTATTTTGA

Product: Zn-dependent peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MKTQYFSDVDETVITTTLSNGLRLQVVPRPAYHKSYAIMTTDYGSIDTQFAPDGKQMVTYPAGIAHFLEHKLFEKEDHDA
FDLFGETGASANAFTSATKTSFLFSTTTQLTKNLQILLDFVQTPFFSKASVAKEQGIIGSEIQMYQDDPGWRGYAGLLEN
LFPNHPAHVDVAGTVASIAQITPEMLYTIHRVFYQPSNMTLIVVGNIDADAIMAFVAANQAAKQFPAPQAIVRGVHADLQ
TDDIVPYRQLEMPISRPKTLVGIKGQVAIPMTAEGWRYQLTIRLLLEVLFGDSSQLYQDWYDRGLIDDSFDFDFTNQRSF
SYGLVGGDTDDPHALSDAIKHVLLNAATQPDLTRDRVALIKRASLGKYYAGLNGLNGVANQLSALSFGQASLFDFPEILS
SITLADLQAMIDQVFQAKALTVLDMIPEAD

Sequences:

>Translated_430_residues
MKTQYFSDVDETVITTTLSNGLRLQVVPRPAYHKSYAIMTTDYGSIDTQFAPDGKQMVTYPAGIAHFLEHKLFEKEDHDA
FDLFGETGASANAFTSATKTSFLFSTTTQLTKNLQILLDFVQTPFFSKASVAKEQGIIGSEIQMYQDDPGWRGYAGLLEN
LFPNHPAHVDVAGTVASIAQITPEMLYTIHRVFYQPSNMTLIVVGNIDADAIMAFVAANQAAKQFPAPQAIVRGVHADLQ
TDDIVPYRQLEMPISRPKTLVGIKGQVAIPMTAEGWRYQLTIRLLLEVLFGDSSQLYQDWYDRGLIDDSFDFDFTNQRSF
SYGLVGGDTDDPHALSDAIKHVLLNAATQPDLTRDRVALIKRASLGKYYAGLNGLNGVANQLSALSFGQASLFDFPEILS
SITLADLQAMIDQVFQAKALTVLDMIPEAD
>Mature_430_residues
MKTQYFSDVDETVITTTLSNGLRLQVVPRPAYHKSYAIMTTDYGSIDTQFAPDGKQMVTYPAGIAHFLEHKLFEKEDHDA
FDLFGETGASANAFTSATKTSFLFSTTTQLTKNLQILLDFVQTPFFSKASVAKEQGIIGSEIQMYQDDPGWRGYAGLLEN
LFPNHPAHVDVAGTVASIAQITPEMLYTIHRVFYQPSNMTLIVVGNIDADAIMAFVAANQAAKQFPAPQAIVRGVHADLQ
TDDIVPYRQLEMPISRPKTLVGIKGQVAIPMTAEGWRYQLTIRLLLEVLFGDSSQLYQDWYDRGLIDDSFDFDFTNQRSF
SYGLVGGDTDDPHALSDAIKHVLLNAATQPDLTRDRVALIKRASLGKYYAGLNGLNGVANQLSALSFGQASLFDFPEILS
SITLADLQAMIDQVFQAKALTVLDMIPEAD

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1787770, Length=234, Percent_Identity=30.3418803418803, Blast_Score=86, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6323421, Length=210, Percent_Identity=27.1428571428571, Blast_Score=66, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 47434; Mature: 47434

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQYFSDVDETVITTTLSNGLRLQVVPRPAYHKSYAIMTTDYGSIDTQFAPDGKQMVTY
CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEC
PAGIAHFLEHKLFEKEDHDAFDLFGETGASANAFTSATKTSFLFSTTTQLTKNLQILLDF
CHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHEEHHHHHHHHHHHHHHHH
VQTPFFSKASVAKEQGIIGSEIQMYQDDPGWRGYAGLLENLFPNHPAHVDVAGTVASIAQ
HHCCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHH
ITPEMLYTIHRVFYQPSNMTLIVVGNIDADAIMAFVAANQAAKQFPAPQAIVRGVHADLQ
HCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
TDDIVPYRQLEMPISRPKTLVGIKGQVAIPMTAEGWRYQLTIRLLLEVLFGDSSQLYQDW
CCCCCCHHHHCCCCCCCCEEEECCCEEEEEEECCCCEEEEHHHHHHHHHHCCCHHHHHHH
YDRGLIDDSFDFDFTNQRSFSYGLVGGDTDDPHALSDAIKHVLLNAATQPDLTRDRVALI
HHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
KRASLGKYYAGLNGLNGVANQLSALSFGQASLFDFPEILSSITLADLQAMIDQVFQAKAL
HHHHCCHHHHCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TVLDMIPEAD
HHHHHCCCCC
>Mature Secondary Structure
MKTQYFSDVDETVITTTLSNGLRLQVVPRPAYHKSYAIMTTDYGSIDTQFAPDGKQMVTY
CCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEC
PAGIAHFLEHKLFEKEDHDAFDLFGETGASANAFTSATKTSFLFSTTTQLTKNLQILLDF
CHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHEEHHHHHHHHHHHHHHHH
VQTPFFSKASVAKEQGIIGSEIQMYQDDPGWRGYAGLLENLFPNHPAHVDVAGTVASIAQ
HHCCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEHHHHHHHHHH
ITPEMLYTIHRVFYQPSNMTLIVVGNIDADAIMAFVAANQAAKQFPAPQAIVRGVHADLQ
HCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
TDDIVPYRQLEMPISRPKTLVGIKGQVAIPMTAEGWRYQLTIRLLLEVLFGDSSQLYQDW
CCCCCCHHHHCCCCCCCCEEEECCCEEEEEEECCCCEEEEHHHHHHHHHHCCCHHHHHHH
YDRGLIDDSFDFDFTNQRSFSYGLVGGDTDDPHALSDAIKHVLLNAATQPDLTRDRVALI
HHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
KRASLGKYYAGLNGLNGVANQLSALSFGQASLFDFPEILSSITLADLQAMIDQVFQAKAL
HHHHCCHHHHCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TVLDMIPEAD
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]