| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116493735
Identifier: 116493735
GI number: 116493735
Start: 161903
End: 162889
Strand: Direct
Name: 116493735
Synonym: LSEI_0163
Alternate gene names: NA
Gene position: 161903-162889 (Clockwise)
Preceding gene: 116493734
Following gene: 116493737
Centisome position: 5.59
GC content: 44.07
Gene sequence:
>987_bases ATGAAAAGAGAAAACGATTTTGGGCCGGCTATTAAGGACTTTTTCTTTCGGGCCGGTGACTTTAAGGGTGTTAGTTCACG ACCACAGTATTGGTGGCTTTTCCTTGCCCAATTTTTATTAGGGTTGGCTGCTGGTGTTCTGTTCGGCATTGCGATTCCAT TTTCTCTCATGGATAGTCATTCGTTAGGCAGCAATATCATGTTCACGCTGACAACGTTGGCATTTTCAATCTTTGGGTAT CTTGGCTATCCACAATTGAGCTTAACGATTCGCCGTTATCGTGACGCCAAAGTTAGTCCGTGGTGGTATCTGGGTATTAT TATCATTAGTTTTATTGGCCCGTTACTAGCGGTTAGCGGCATGAGTTGGTGGTTGGCATTGCTGTTTCCTTTAATTGGCG GCATTGCTAACTTGGTCATTCTATTGTTGCCGAGTCGAGAACAGAAAGTTGTACCGTTTCCGGCTCAACCTAACACGCGC GGTACGATTGATGTTGGTTTTGGTACAGCAGTTAAGGACTTCTTCATCCGCGGTGGTGACTTTACTGGTGAATCCAGTCG CAGCCAATATTGGTGGAGTATCCTGTTTGGTATGATTATCATCATCCCTACTTTTTTGTTTATGATCTTCTCAATTATTT CAATTATTATCGGTGGCGCGGCCATTAGCGGATTTAATAGCCAAAATATTGACCATCTTGTGAATTCGCTTGGGACTGGT GCAATCATCATCGTTTTCATTCTTTTCGCCATCATTTACGCGTGGTCAATGTTAGCTCTGCCAGCGTTGACAGTTGGTTG GCGGCGATTCAAAGATGCAGGCGTTAGTCCATGGTGGTTGATTGCTTTCAACGTCGTATCAGCATTTCTATCAACTCTTG ATCGAAATGCGGGTAATGTGCCGTTAAGCTTAATTGCGTTACTCCTCATCATCGTTCAGATTGTCATTCTTGCTCTGCCA ACCAAGTTTCGTGACGATGAGGCATAA
Upstream 100 bases:
>100_bases CCTGTGCATAAAATTCTTAAGTTTATGAAGGTTATAAAGTTTTGGTGAGACGACCGCAAATGGTATACTCGCCTTAACAA ATACTTGGAGGCGAGGCACG
Downstream 100 bases:
>100_bases GCACCACTCAATGTATAAAAAAATGCAGCCGCGGCTGCATTTTTTAATGAAGTAAAGGTCTCGTAACGTTGGCTAATAGA TACCCTTTTCATCCTCATCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MKRENDFGPAIKDFFFRAGDFKGVSSRPQYWWLFLAQFLLGLAAGVLFGIAIPFSLMDSHSLGSNIMFTLTTLAFSIFGY LGYPQLSLTIRRYRDAKVSPWWYLGIIIISFIGPLLAVSGMSWWLALLFPLIGGIANLVILLLPSREQKVVPFPAQPNTR GTIDVGFGTAVKDFFIRGGDFTGESSRSQYWWSILFGMIIIIPTFLFMIFSIISIIIGGAAISGFNSQNIDHLVNSLGTG AIIIVFILFAIIYAWSMLALPALTVGWRRFKDAGVSPWWLIAFNVVSAFLSTLDRNAGNVPLSLIALLLIIVQIVILALP TKFRDDEA
Sequences:
>Translated_328_residues MKRENDFGPAIKDFFFRAGDFKGVSSRPQYWWLFLAQFLLGLAAGVLFGIAIPFSLMDSHSLGSNIMFTLTTLAFSIFGY LGYPQLSLTIRRYRDAKVSPWWYLGIIIISFIGPLLAVSGMSWWLALLFPLIGGIANLVILLLPSREQKVVPFPAQPNTR GTIDVGFGTAVKDFFIRGGDFTGESSRSQYWWSILFGMIIIIPTFLFMIFSIISIIIGGAAISGFNSQNIDHLVNSLGTG AIIIVFILFAIIYAWSMLALPALTVGWRRFKDAGVSPWWLIAFNVVSAFLSTLDRNAGNVPLSLIALLLIIVQIVILALP TKFRDDEA >Mature_328_residues MKRENDFGPAIKDFFFRAGDFKGVSSRPQYWWLFLAQFLLGLAAGVLFGIAIPFSLMDSHSLGSNIMFTLTTLAFSIFGY LGYPQLSLTIRRYRDAKVSPWWYLGIIIISFIGPLLAVSGMSWWLALLFPLIGGIANLVILLLPSREQKVVPFPAQPNTR GTIDVGFGTAVKDFFIRGGDFTGESSRSQYWWSILFGMIIIIPTFLFMIFSIISIIIGGAAISGFNSQNIDHLVNSLGTG AIIIVFILFAIIYAWSMLALPALTVGWRRFKDAGVSPWWLIAFNVVSAFLSTLDRNAGNVPLSLIALLLIIVQIVILALP TKFRDDEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36363; Mature: 36363
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRENDFGPAIKDFFFRAGDFKGVSSRPQYWWLFLAQFLLGLAAGVLFGIAIPFSLMDSH CCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SLGSNIMFTLTTLAFSIFGYLGYPQLSLTIRRYRDAKVSPWWYLGIIIISFIGPLLAVSG CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH MSWWLALLFPLIGGIANLVILLLPSREQKVVPFPAQPNTRGTIDVGFGTAVKDFFIRGGD HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEECCHHHHHHHHHCCCC FTGESSRSQYWWSILFGMIIIIPTFLFMIFSIISIIIGGAAISGFNSQNIDHLVNSLGTG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCH AIIIVFILFAIIYAWSMLALPALTVGWRRFKDAGVSPWWLIAFNVVSAFLSTLDRNAGNV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC PLSLIALLLIIVQIVILALPTKFRDDEA CHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MKRENDFGPAIKDFFFRAGDFKGVSSRPQYWWLFLAQFLLGLAAGVLFGIAIPFSLMDSH CCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SLGSNIMFTLTTLAFSIFGYLGYPQLSLTIRRYRDAKVSPWWYLGIIIISFIGPLLAVSG CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH MSWWLALLFPLIGGIANLVILLLPSREQKVVPFPAQPNTRGTIDVGFGTAVKDFFIRGGD HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEECCHHHHHHHHHCCCC FTGESSRSQYWWSILFGMIIIIPTFLFMIFSIISIIIGGAAISGFNSQNIDHLVNSLGTG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCH AIIIVFILFAIIYAWSMLALPALTVGWRRFKDAGVSPWWLIAFNVVSAFLSTLDRNAGNV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC PLSLIALLLIIVQIVILALPTKFRDDEA CHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA