| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116493734
Identifier: 116493734
GI number: 116493734
Start: 160302
End: 161762
Strand: Direct
Name: 116493734
Synonym: LSEI_0162
Alternate gene names: NA
Gene position: 160302-161762 (Clockwise)
Preceding gene: 116493733
Following gene: 116493735
Centisome position: 5.54
GC content: 42.85
Gene sequence:
>1461_bases GTGAAATTACTTGAACTGATGGAAAAGAACGATCAAAAGAAACTTAAGTTACTGTATTATCTTGATCAGCATCCGAATCG CAAATTGAAGAACAGCGAGTTGCAAGATAAATTGCAGATTTCATATTATCTTTTTAAACGCCAGACCAAAGAGATTGCTG AAGATATTGCAGCATTCGACTTGAGTGATTTTTTTGCGATCGAAGTGACGAACACTACCGTTATCTTGCATGAATATCAC AATACGAATGCATCGGTTTTTTTGGAACATTATCTGAAGCAGTCACTTCAAATTAAGATCTTGATGACGCTGATGCACGA ACCACCAGCATTTAATTTAACCGAATTTGCCGAGGAACACTTTGGTAGCTATGCCTTTATGTACAAACGGTATACGGCTC TGCGGGATACGCTCAAAAGTTGGGGCATTGTGCTGAGTAATGATGGCAAGCTGACTGGTGATGAATTGGCGATCAGACTG CTTCTGACGAAAATCATGGTGGTTGCGCATATTGATGAAACCGGGTTTGATGACAATGTTTGCAGTACGCTGCATGAGCT TTTGCAGTTGCTGAAGATGACAGAAGCAACGCCGTCAATGAGTCAGCTCATCGAGACTAAAGCGTATTTTTTGATCAGTT TGGTTAGATTCCAGCAAGGGCATGTCATTGCCACATCACCGGAAATTGTTGATTTGGTGCGCAATATTCGCGAGCGCACG CTGGAAACCAGAAAACGGGTTATTGCGATTTATCAGGCGCATTTTACCGCAAGCGACCAGACGATTGACAGCGAGTGCGA TTATTTTGGGACGTTCCTTGCCATTATTGGCATTATTACGTCGGAGGAGATCGTTTTTCCCGATACAATCAAACAGCACG GCCGGGCTTTCATTCAAGGGTTTGAAGCCAATTTTGATGTACAGTTGACATTGTCTGAGAAGGCCAATATCGAATACGTT GTCAACAAGTGTTTGATTGATGTGCTGGCCTTGCCGTTTAGGAGTGAATTCTTTGATGATCATATTGAAGTCAGTTACTT CTTTAGAATGTATCCCGAATTCTTTGACTATTGTCAGCAATTTGTCCAGGCGCGGTCGGTTAAGTTGGATAGGAATCAGT CGAAGTTTATGTTTTACCATTGTCTGTTGACCTTGGCAGCCAATGTGCCTTTGAACAAGGTGCTGGAGCCACTTTATGTC TGTGTTGATTTCACGCTGGGCAAGGAGTACAACACCATTATTGAACGCGACATCAAGTACTTTTCAACATTGAACGTCAA GGTGACCAACGAAGTCCGGCCAGAAACTAAATTGATTATCACGGATTTGGTCAATGCTTATCATGATACGGACATTTCAA AAGTCATCTGGCTGTCACCGCCGCGACCAGAAGATTGGGAGAATGTCATTGAAGAACTGCTGGATTTGCGGCTAGCCGAT CGCACGGTGAAAAAGTCATAA
Upstream 100 bases:
>100_bases CAACGCAACAACAAGCATATTTGGCCAATATTGCTTACCGTTTTGCTGGGAAAACATTGCTGGCACGTACAGGTACGATC TCAAAAACAAGGTGGATTTT
Downstream 100 bases:
>100_bases TGAGAGCAGTGTGATCAACCTGTTCAGTGGCATGCCGAAGCCTGTGCATAAAATTCTTAAGTTTATGAAGGTTATAAAGT TTTGGTGAGACGACCGCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 486; Mature: 486
Protein sequence:
>486_residues MKLLELMEKNDQKKLKLLYYLDQHPNRKLKNSELQDKLQISYYLFKRQTKEIAEDIAAFDLSDFFAIEVTNTTVILHEYH NTNASVFLEHYLKQSLQIKILMTLMHEPPAFNLTEFAEEHFGSYAFMYKRYTALRDTLKSWGIVLSNDGKLTGDELAIRL LLTKIMVVAHIDETGFDDNVCSTLHELLQLLKMTEATPSMSQLIETKAYFLISLVRFQQGHVIATSPEIVDLVRNIRERT LETRKRVIAIYQAHFTASDQTIDSECDYFGTFLAIIGIITSEEIVFPDTIKQHGRAFIQGFEANFDVQLTLSEKANIEYV VNKCLIDVLALPFRSEFFDDHIEVSYFFRMYPEFFDYCQQFVQARSVKLDRNQSKFMFYHCLLTLAANVPLNKVLEPLYV CVDFTLGKEYNTIIERDIKYFSTLNVKVTNEVRPETKLIITDLVNAYHDTDISKVIWLSPPRPEDWENVIEELLDLRLAD RTVKKS
Sequences:
>Translated_486_residues MKLLELMEKNDQKKLKLLYYLDQHPNRKLKNSELQDKLQISYYLFKRQTKEIAEDIAAFDLSDFFAIEVTNTTVILHEYH NTNASVFLEHYLKQSLQIKILMTLMHEPPAFNLTEFAEEHFGSYAFMYKRYTALRDTLKSWGIVLSNDGKLTGDELAIRL LLTKIMVVAHIDETGFDDNVCSTLHELLQLLKMTEATPSMSQLIETKAYFLISLVRFQQGHVIATSPEIVDLVRNIRERT LETRKRVIAIYQAHFTASDQTIDSECDYFGTFLAIIGIITSEEIVFPDTIKQHGRAFIQGFEANFDVQLTLSEKANIEYV VNKCLIDVLALPFRSEFFDDHIEVSYFFRMYPEFFDYCQQFVQARSVKLDRNQSKFMFYHCLLTLAANVPLNKVLEPLYV CVDFTLGKEYNTIIERDIKYFSTLNVKVTNEVRPETKLIITDLVNAYHDTDISKVIWLSPPRPEDWENVIEELLDLRLAD RTVKKS >Mature_486_residues MKLLELMEKNDQKKLKLLYYLDQHPNRKLKNSELQDKLQISYYLFKRQTKEIAEDIAAFDLSDFFAIEVTNTTVILHEYH NTNASVFLEHYLKQSLQIKILMTLMHEPPAFNLTEFAEEHFGSYAFMYKRYTALRDTLKSWGIVLSNDGKLTGDELAIRL LLTKIMVVAHIDETGFDDNVCSTLHELLQLLKMTEATPSMSQLIETKAYFLISLVRFQQGHVIATSPEIVDLVRNIRERT LETRKRVIAIYQAHFTASDQTIDSECDYFGTFLAIIGIITSEEIVFPDTIKQHGRAFIQGFEANFDVQLTLSEKANIEYV VNKCLIDVLALPFRSEFFDDHIEVSYFFRMYPEFFDYCQQFVQARSVKLDRNQSKFMFYHCLLTLAANVPLNKVLEPLYV CVDFTLGKEYNTIIERDIKYFSTLNVKVTNEVRPETKLIITDLVNAYHDTDISKVIWLSPPRPEDWENVIEELLDLRLAD RTVKKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56689; Mature: 56689
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLELMEKNDQKKLKLLYYLDQHPNRKLKNSELQDKLQISYYLFKRQTKEIAEDIAAFD CCHHHHHCCCCCHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC LSDFFAIEVTNTTVILHEYHNTNASVFLEHYLKQSLQIKILMTLMHEPPAFNLTEFAEEH CCCEEEEEEECEEEEEEEECCCCHHHHHHHHHHHHHHHHHEEHHHCCCCCCCHHHHHHHH FGSYAFMYKRYTALRDTLKSWGIVLSNDGKLTGDELAIRLLLTKIMVVAHIDETGFDDNV CCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH CSTLHELLQLLKMTEATPSMSQLIETKAYFLISLVRFQQGHVIATSPEIVDLVRNIRERT HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHH LETRKRVIAIYQAHFTASDQTIDSECDYFGTFLAIIGIITSEEIVFPDTIKQHGRAFIQG HHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCHHHHHCCHHHHHH FEANFDVQLTLSEKANIEYVVNKCLIDVLALPFRSEFFDDHIEVSYFFRMYPEFFDYCQQ CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH FVQARSVKLDRNQSKFMFYHCLLTLAANVPLNKVLEPLYVCVDFTLGKEYNTIIERDIKY HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH FSTLNVKVTNEVRPETKLIITDLVNAYHDTDISKVIWLSPPRPEDWENVIEELLDLRLAD HHEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH RTVKKS HHHCCC >Mature Secondary Structure MKLLELMEKNDQKKLKLLYYLDQHPNRKLKNSELQDKLQISYYLFKRQTKEIAEDIAAFD CCHHHHHCCCCCHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC LSDFFAIEVTNTTVILHEYHNTNASVFLEHYLKQSLQIKILMTLMHEPPAFNLTEFAEEH CCCEEEEEEECEEEEEEEECCCCHHHHHHHHHHHHHHHHHEEHHHCCCCCCCHHHHHHHH FGSYAFMYKRYTALRDTLKSWGIVLSNDGKLTGDELAIRLLLTKIMVVAHIDETGFDDNV CCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH CSTLHELLQLLKMTEATPSMSQLIETKAYFLISLVRFQQGHVIATSPEIVDLVRNIRERT HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHH LETRKRVIAIYQAHFTASDQTIDSECDYFGTFLAIIGIITSEEIVFPDTIKQHGRAFIQG HHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEECCHHHHHCCHHHHHH FEANFDVQLTLSEKANIEYVVNKCLIDVLALPFRSEFFDDHIEVSYFFRMYPEFFDYCQQ CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHH FVQARSVKLDRNQSKFMFYHCLLTLAANVPLNKVLEPLYVCVDFTLGKEYNTIIERDIKY HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH FSTLNVKVTNEVRPETKLIITDLVNAYHDTDISKVIWLSPPRPEDWENVIEELLDLRLAD HHEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH RTVKKS HHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA