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The map label for this gene is rarA [H]

Identifier: 116493737

GI number: 116493737

Start: 163472

End: 164818

Strand: Direct

Name: rarA [H]

Synonym: LSEI_0165

Alternate gene names: 116493737

Gene position: 163472-164818 (Clockwise)

Preceding gene: 116493735

Following gene: 116493738

Centisome position: 5.65

GC content: 48.55

Gene sequence:

>1347_bases
ATGGATCAAAGTCTATTTCAAAATGGTAACTTCCAACCTTTGGCGAGTCGTATGCGGCCACAGACGCTTGATGAGTTTGT
CGGCCAAACGCATTTGCTAGGGAAGGATAAGGTGCTCAGCAATCTTATCGAACATGACGAGATTAGTTCCATGATTTTCT
GGGGTCCGCCTGGTGTCGGTAAAACAACATTGGCGCGGATCATTGCTCGGCGAACGAAGGCACAGTTTGTGACATTTTCA
GCAGTCACCAGCGGGATTAAAGAAATCAAGCAGGTGATGAAAGAGGCTGAACAGAATCGCGAGCTGGGTCAGAAAACCAT
TGTGTTTGTTGATGAAATTCATCGTTTCAACAAGGCGCAGCAGGATGCCTTTCTGCCATATGTCGAACGCGGCAGCATTA
TCCTGATTGGTGCGACAACCGAGAATCCTTCGTTTGAAGTCAATGCGGCACTCTTGTCACGGACGCGGGTTTTCGTGTTG
CACGGCTTGACCAGTGCTGAATTGGTTGACCTGTTACAGCGAGCGTTAAAAGATCCGCGCGGTTATGGTCTGCAGAAGGT
TAAGATCGGCAAAAAGCTCTTAGCTCAGATTGCTGATTTTGCTAACGGGGATGCTCGAATCGCTTTGAACACCTTGGAGA
TGGCGGTGACAAACGCCGAAACCAAAGGCGGCGTGATAACGGTCACCCAAGCAGATGTGGCCCAGTTGTTGACGAAGAAA
GCCTTATTGTATGACAAGAATGGTGAGGAGCACTATAATCTAATATCAGCATTACACAAATCAATGCGCAATTCCGATGT
TGATGCGGCCATTTATTGGCTGGCTCGAATGCTGGAAGCAGGGGAAGACCCCTTGTATGTCGCTCGGCGGCTAGTTCGAT
TTGCGAGCGAAGATATCGGAATGGCCGACTCACGCGCATTGGAGATTACAATTGCTGTTTATCAGGCGTGTCAATTTATT
GGGATGCCTGAGTGCACGGTTCATCTCACACATGCAGTCACCTATTTGGCACTTGCACCGAAATCGAATGCACTCTACAC
AGCGTATGAAGGCGCAAAGAAAGATGCGACCGAAACGCTGGCCGAACCAGTTCCACTTCAGATTCGAAATGGGGTAACGG
ATTTGATGCAGGATCTGGGTTATGGTAAGGACTATCAATATGCTCACAACACAAAAGATAAACTAACGACCATGCAAACC
ATGCCGGATAATCTTATCGGCAAAACGTACTATCATCCCACGACTCAAGGCAGCGAAGCCAAGGTCAAGGAACGGCTAGA
GCAGATCAAGGCCTGGCATGCGCAACACCCTGACCCCGATTCGCCGAAAACCAAGAAAAAGTCATGA

Upstream 100 bases:

>100_bases
ACTTATCATGATGGTAACACAATAATAGAACAATTGAATGTTTGCGCCGCGGCCTGAAAACGCTTAATATTAAGTCTGGA
CGTTGATCGGAGGTGAGCAT

Downstream 100 bases:

>100_bases
TGCTGTGCGATTACGTGTGCGGCAATCCGACTACCCGTTTAGAGGAGGAAAAAAACAATGGCAAAAATTCTCGCAGTCAA
CGCAGGCAGTTCAACCCTGA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MDQSLFQNGNFQPLASRMRPQTLDEFVGQTHLLGKDKVLSNLIEHDEISSMIFWGPPGVGKTTLARIIARRTKAQFVTFS
AVTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVL
HGLTSAELVDLLQRALKDPRGYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETKGGVITVTQADVAQLLTKK
ALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPLYVARRLVRFASEDIGMADSRALEITIAVYQACQFI
GMPECTVHLTHAVTYLALAPKSNALYTAYEGAKKDATETLAEPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQT
MPDNLIGKTYYHPTTQGSEAKVKERLEQIKAWHAQHPDPDSPKTKKKS

Sequences:

>Translated_448_residues
MDQSLFQNGNFQPLASRMRPQTLDEFVGQTHLLGKDKVLSNLIEHDEISSMIFWGPPGVGKTTLARIIARRTKAQFVTFS
AVTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVL
HGLTSAELVDLLQRALKDPRGYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETKGGVITVTQADVAQLLTKK
ALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPLYVARRLVRFASEDIGMADSRALEITIAVYQACQFI
GMPECTVHLTHAVTYLALAPKSNALYTAYEGAKKDATETLAEPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQT
MPDNLIGKTYYHPTTQGSEAKVKERLEQIKAWHAQHPDPDSPKTKKKS
>Mature_448_residues
MDQSLFQNGNFQPLASRMRPQTLDEFVGQTHLLGKDKVLSNLIEHDEISSMIFWGPPGVGKTTLARIIARRTKAQFVTFS
AVTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQQDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVL
HGLTSAELVDLLQRALKDPRGYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETKGGVITVTQADVAQLLTKK
ALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPLYVARRLVRFASEDIGMADSRALEITIAVYQACQFI
GMPECTVHLTHAVTYLALAPKSNALYTAYEGAKKDATETLAEPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQT
MPDNLIGKTYYHPTTQGSEAKVKERLEQIKAWHAQHPDPDSPKTKKKS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=47.2602739726027, Blast_Score=388, Evalue=1e-108,
Organism=Homo sapiens, GI18426904, Length=437, Percent_Identity=42.79176201373, Blast_Score=333, Evalue=1e-91,
Organism=Escherichia coli, GI1787119, Length=440, Percent_Identity=47.5, Blast_Score=414, Evalue=1e-117,
Organism=Saccharomyces cerevisiae, GI6324111, Length=404, Percent_Identity=40.3465346534653, Blast_Score=307, Evalue=2e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=209, Percent_Identity=24.8803827751196, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49879; Mature: 49879

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQSLFQNGNFQPLASRMRPQTLDEFVGQTHLLGKDKVLSNLIEHDEISSMIFWGPPGVG
CCCCHHCCCCCCHHHHHCCHHHHHHHCCCHHCCCHHHHHHHHHHHHHHCCEEEECCCCCC
KTTLARIIARRTKAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
QDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKDPR
HHHCCCEECCCCEEEEEECCCCCCCEEHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCC
GYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETKGGVITVTQADVAQLLTKK
CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH
ALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPLYVARRLVRFASEDIG
HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
MADSRALEITIAVYQACQFIGMPECTVHLTHAVTYLALAPKSNALYTAYEGAKKDATETL
CCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCEEEECCCCCHHHHHHH
AEPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQTMPDNLIGKTYYHPTTQGSEA
CCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHCCCCEECCCCCCCHH
KVKERLEQIKAWHAQHPDPDSPKTKKKS
HHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDQSLFQNGNFQPLASRMRPQTLDEFVGQTHLLGKDKVLSNLIEHDEISSMIFWGPPGVG
CCCCHHCCCCCCHHHHHCCHHHHHHHCCCHHCCCHHHHHHHHHHHHHHCCEEEECCCCCC
KTTLARIIARRTKAQFVTFSAVTSGIKEIKQVMKEAEQNRELGQKTIVFVDEIHRFNKAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
QDAFLPYVERGSIILIGATTENPSFEVNAALLSRTRVFVLHGLTSAELVDLLQRALKDPR
HHHCCCEECCCCEEEEEECCCCCCCEEHHHHHHHHHEEEEECCCHHHHHHHHHHHHCCCC
GYGLQKVKIGKKLLAQIADFANGDARIALNTLEMAVTNAETKGGVITVTQADVAQLLTKK
CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH
ALLYDKNGEEHYNLISALHKSMRNSDVDAAIYWLARMLEAGEDPLYVARRLVRFASEDIG
HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
MADSRALEITIAVYQACQFIGMPECTVHLTHAVTYLALAPKSNALYTAYEGAKKDATETL
CCCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHEECCCCCCEEEECCCCCHHHHHHH
AEPVPLQIRNGVTDLMQDLGYGKDYQYAHNTKDKLTTMQTMPDNLIGKTYYHPTTQGSEA
CCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHCCCCEECCCCCCCHH
KVKERLEQIKAWHAQHPDPDSPKTKKKS
HHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]