| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116493690
Identifier: 116493690
GI number: 116493690
Start: 111985
End: 113148
Strand: Direct
Name: 116493690
Synonym: LSEI_0118
Alternate gene names: NA
Gene position: 111985-113148 (Clockwise)
Preceding gene: 116493689
Following gene: 116493694
Centisome position: 3.87
GC content: 47.51
Gene sequence:
>1164_bases ATGGATGCCATTTTGATGAGTTTAATGACAGCACTCAATGAACACCTGCTGATCAATGTGTATCAGCGCGATACCGACGA TTTTTACACCGGATACGTACAGGTGTTAGGTCATGATGCGGTTGTTCTGGGAACCTACAATGATTCAGGGATTGCCGATG GATGTGCCTTGATCGCATTTTCTGCGATTGATCAGGTTGAATTTGCCGGGGATGATCTGGATAGCATGAATTTTCGAATT AACTTGGCACAGGCCCAGCATTTTTTGACGCTGCAAGGCCAAGAAAAGCCATTGCAGTTCGATGCAACACAGAACTTGAT TCAGCAACTGGCGACGCAGGCTAAGGCGAATGGTCAAATGGTCATGGTCGTGGTGGCCGATGATGATGCCTATCTTGAAG GGCAGGTAACAGCTGTGGCTGAGGATCGCTTTAGTATGGCGATCTTCAACAAATTCAACTACACCGATGTGCGCGCCTTG CAGGTTGATTTCTCGGATATTTTAGTTATGGAATTCCATGGCCTTGATCTCAAACTGGAAACGGAACTGGTCTGGCAACG TGATCATCTAAAGCACGTGGCCACCAAGCTGTACCAAAATGACGGTCAACTGGCTGGCGTGTTTCAGAATGCCTTGGCGA ACAATCGCTTGATTTCAGTCGTACCCAAGGGACCGGAAGACCAGTTCTTTGTGGGTCGCGTCAAAGCGGTCAACGACCGG GTTGTGGTGTTGAGTCTTAAAGACATGGCCGGCCAGTTTGGTGGCTATATTTTACTGACGTTACCAAGCATCCAAAATGT AGCGACGGCCTCGGATTATTTGCAAACGATCAGCTTTTACGAAAAATGGGATCAAACCCATCACTTCAGCCAGCAGCCAG TGTTGAATGCTGATCGTGAGTTCGATCCGAATGATGACTTGATTCGGACCATCATCTCAGAGGCCGCTGGGTTTGAACGG GTGGTTCGCATTAAAGTAGCTGACAGCGATGAACATTTTCTGGGTTATCCGGAAAATGTCGGTGAAACCGATTTTGACTT AAACCTAGTCGGACCAGATGATGGCGAAACGGCGCAAATTCGCTATGGTCAGATTCGTGAAATTGCCTTTGGCCACATCT TTGCGTATTTGCAAGAGGCACAATTGAAAAATGCTGGACGCTAA
Upstream 100 bases:
>100_bases TTACGAATATTGCCTATAATGGTCCGGATCAATAAACCATTAGCAAGAAAGATTAGAAAGTTATTTTTAGATTTAAGCGC AAGAAAGTGAGGGATGCCGC
Downstream 100 bases:
>100_bases TCTGTACTTGGCACATAACAAGTCGAGCCATCGTTACCATCTAGGAATTGGGCTTTATTAGATTTTAAATACTCTGGGAA AAAATCTGGGCTAGAAGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MDAILMSLMTALNEHLLINVYQRDTDDFYTGYVQVLGHDAVVLGTYNDSGIADGCALIAFSAIDQVEFAGDDLDSMNFRI NLAQAQHFLTLQGQEKPLQFDATQNLIQQLATQAKANGQMVMVVVADDDAYLEGQVTAVAEDRFSMAIFNKFNYTDVRAL QVDFSDILVMEFHGLDLKLETELVWQRDHLKHVATKLYQNDGQLAGVFQNALANNRLISVVPKGPEDQFFVGRVKAVNDR VVVLSLKDMAGQFGGYILLTLPSIQNVATASDYLQTISFYEKWDQTHHFSQQPVLNADREFDPNDDLIRTIISEAAGFER VVRIKVADSDEHFLGYPENVGETDFDLNLVGPDDGETAQIRYGQIREIAFGHIFAYLQEAQLKNAGR
Sequences:
>Translated_387_residues MDAILMSLMTALNEHLLINVYQRDTDDFYTGYVQVLGHDAVVLGTYNDSGIADGCALIAFSAIDQVEFAGDDLDSMNFRI NLAQAQHFLTLQGQEKPLQFDATQNLIQQLATQAKANGQMVMVVVADDDAYLEGQVTAVAEDRFSMAIFNKFNYTDVRAL QVDFSDILVMEFHGLDLKLETELVWQRDHLKHVATKLYQNDGQLAGVFQNALANNRLISVVPKGPEDQFFVGRVKAVNDR VVVLSLKDMAGQFGGYILLTLPSIQNVATASDYLQTISFYEKWDQTHHFSQQPVLNADREFDPNDDLIRTIISEAAGFER VVRIKVADSDEHFLGYPENVGETDFDLNLVGPDDGETAQIRYGQIREIAFGHIFAYLQEAQLKNAGR >Mature_387_residues MDAILMSLMTALNEHLLINVYQRDTDDFYTGYVQVLGHDAVVLGTYNDSGIADGCALIAFSAIDQVEFAGDDLDSMNFRI NLAQAQHFLTLQGQEKPLQFDATQNLIQQLATQAKANGQMVMVVVADDDAYLEGQVTAVAEDRFSMAIFNKFNYTDVRAL QVDFSDILVMEFHGLDLKLETELVWQRDHLKHVATKLYQNDGQLAGVFQNALANNRLISVVPKGPEDQFFVGRVKAVNDR VVVLSLKDMAGQFGGYILLTLPSIQNVATASDYLQTISFYEKWDQTHHFSQQPVLNADREFDPNDDLIRTIISEAAGFER VVRIKVADSDEHFLGYPENVGETDFDLNLVGPDDGETAQIRYGQIREIAFGHIFAYLQEAQLKNAGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43317; Mature: 43317
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDAILMSLMTALNEHLLINVYQRDTDDFYTGYVQVLGHDAVVLGTYNDSGIADGCALIAF CHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHEEECCCEEEEEECCCCCCCCHHHHHHH SAIDQVEFAGDDLDSMNFRINLAQAQHFLTLQGQEKPLQFDATQNLIQQLATQAKANGQM HHHHHHHCCCCCCCCCEEEEEEECCEEEEEECCCCCCEEECHHHHHHHHHHHHHCCCCCE VMVVVADDDAYLEGQVTAVAEDRFSMAIFNKFNYTDVRALQVDFSDILVMEFHGLDLKLE EEEEEECCCCEECCEEEEEECCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCEEEE TELVWQRDHLKHVATKLYQNDGQLAGVFQNALANNRLISVVPKGPEDQFFVGRVKAVNDR HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCCE VVVLSLKDMAGQFGGYILLTLPSIQNVATASDYLQTISFYEKWDQTHHFSQQPVLNADRE EEEEEEHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC FDPNDDLIRTIISEAAGFERVVRIKVADSDEHFLGYPENVGETDFDLNLVGPDDGETAQI CCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEECCCCCCCCCCCEEEEECCCCCCEEEE RYGQIREIAFGHIFAYLQEAQLKNAGR ECCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MDAILMSLMTALNEHLLINVYQRDTDDFYTGYVQVLGHDAVVLGTYNDSGIADGCALIAF CHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHEEECCCEEEEEECCCCCCCCHHHHHHH SAIDQVEFAGDDLDSMNFRINLAQAQHFLTLQGQEKPLQFDATQNLIQQLATQAKANGQM HHHHHHHCCCCCCCCCEEEEEEECCEEEEEECCCCCCEEECHHHHHHHHHHHHHCCCCCE VMVVVADDDAYLEGQVTAVAEDRFSMAIFNKFNYTDVRALQVDFSDILVMEFHGLDLKLE EEEEEECCCCEECCEEEEEECCCEEEEEEECCCCCEEEEEEECCCEEEEEEECCCCEEEE TELVWQRDHLKHVATKLYQNDGQLAGVFQNALANNRLISVVPKGPEDQFFVGRVKAVNDR HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCCCCCCEEEEEEEECCCE VVVLSLKDMAGQFGGYILLTLPSIQNVATASDYLQTISFYEKWDQTHHFSQQPVLNADRE EEEEEEHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC FDPNDDLIRTIISEAAGFERVVRIKVADSDEHFLGYPENVGETDFDLNLVGPDDGETAQI CCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEECCCCCCCCCCCEEEEECCCCCCEEEE RYGQIREIAFGHIFAYLQEAQLKNAGR ECCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA