| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is yerH [H]
Identifier: 116493116
GI number: 116493116
Start: 1358809
End: 1359966
Strand: Reverse
Name: yerH [H]
Synonym: PEPE_1371
Alternate gene names: 116493116
Gene position: 1359966-1358809 (Counterclockwise)
Preceding gene: 116493117
Following gene: 116493115
Centisome position: 74.22
GC content: 36.61
Gene sequence:
>1158_bases ATGAATGTAACTAAAAAATTGAGTTTATTAGTTGCCACATTAGTTATGGGCGTGGGACTGACTGCCTGCGGAAGTTTAGA TAATTCATCAATGCAATCTTCTACCAATAATGTGACCGGAAAAAAGAACAAAAAAAATAATTACCAAACAACAGGATCAG CTTCAGGCTCGTATGCTGGGGTGATTAAAAATGGAAAATACGTGACAAGCAAGTCACGGGGATTAACTGCCGATCAAAAT GGTAATGTTAATAACACCAAGAGTTTCGAGAGTGGATTACAAGACATTTCCAAAAAGATTTTTCCAACCTCTCAATATGT TTTCCAAGAAGGTCAATATCTGAGTTCAGATACTGTTCAAAATTGGCTTGATCGGGAATCTAAGAGCAATCCGGAAGGGC TGAACCCTAAGGATAATGGTTCAAAAGACCCAGACAAACGAAACCCAATTTATCTCCAGGCTCTTGAAGAACAGGATTAT ATGGAAAAATCAGGAACTTCTTTGAAACTCAAAGGGGTTACAATTGGATTAGCGATGAATTCGGTTGATTATTATCAAAA AGAACAATACGGCGCTCAATATGAGACTAAAATCTCAGATGCAGAGATTAAGGCTAAGAGTCAAGAAATTGCTCAAAAAG TGCTAGAACGACTTCGCAAGAAATCTGAATTTAAAAATGTTCCAATTGTGATTGCAGTCTATAAACAAGCTTCCAATGAT AGCCTAGTTGGTGGAACGTTTATGCGTTATTCTAACAATTCCGGTGAAAAGCTTGCAAAATGGAAAGACTTAGACTACAA GAATGTTGTTTATCCAATTAGTGATACGGAAACCTCACCTAATAGCAATGATTCTAGTGCGTTTGATAACTTTAAGACGC AAGTAGAAAGCTTCTTCCCTAATTTAAGTGGGATTACTGCAAAAGCAAGATACGACGGTAAATCGATGGAAGGTATGAGT GTATCAATCACGACTCAATTCTATAGTGAGACTGAGATTAACAGTTTTACTCAATTTGTTTCAACTCAGGCTGAAAAGTA TCTTCCTAGTGGAGTTAATATTGATATAACAATTAAATCTACCGATGAAGTCCAGAGTTTCCTATCGCGCTCAGCTAAAG AAAAGACGTTTAGTTCTCATGTCTTTTCAAGTTATTAA
Upstream 100 bases:
>100_bases CTTTTGCACCAATTAAACGGGTTGTTGAATAAAGAATTTTATACAGGGTTTAGGTTAGCGGTATAATTAGGGATAAATGA AAGATTGAGGAAACTTTTCT
Downstream 100 bases:
>100_bases ATCTTAGAAGGAGAAATCAATGACAACTGAAAATAACATTACTAAAAAAGATGTAGAACATGTTGCTACGTTAGCTAAAC TAAAATTTAATGACGAACAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 385
Protein sequence:
>385_residues MNVTKKLSLLVATLVMGVGLTACGSLDNSSMQSSTNNVTGKKNKKNNYQTTGSASGSYAGVIKNGKYVTSKSRGLTADQN GNVNNTKSFESGLQDISKKIFPTSQYVFQEGQYLSSDTVQNWLDRESKSNPEGLNPKDNGSKDPDKRNPIYLQALEEQDY MEKSGTSLKLKGVTIGLAMNSVDYYQKEQYGAQYETKISDAEIKAKSQEIAQKVLERLRKKSEFKNVPIVIAVYKQASND SLVGGTFMRYSNNSGEKLAKWKDLDYKNVVYPISDTETSPNSNDSSAFDNFKTQVESFFPNLSGITAKARYDGKSMEGMS VSITTQFYSETEINSFTQFVSTQAEKYLPSGVNIDITIKSTDEVQSFLSRSAKEKTFSSHVFSSY
Sequences:
>Translated_385_residues MNVTKKLSLLVATLVMGVGLTACGSLDNSSMQSSTNNVTGKKNKKNNYQTTGSASGSYAGVIKNGKYVTSKSRGLTADQN GNVNNTKSFESGLQDISKKIFPTSQYVFQEGQYLSSDTVQNWLDRESKSNPEGLNPKDNGSKDPDKRNPIYLQALEEQDY MEKSGTSLKLKGVTIGLAMNSVDYYQKEQYGAQYETKISDAEIKAKSQEIAQKVLERLRKKSEFKNVPIVIAVYKQASND SLVGGTFMRYSNNSGEKLAKWKDLDYKNVVYPISDTETSPNSNDSSAFDNFKTQVESFFPNLSGITAKARYDGKSMEGMS VSITTQFYSETEINSFTQFVSTQAEKYLPSGVNIDITIKSTDEVQSFLSRSAKEKTFSSHVFSSY >Mature_385_residues MNVTKKLSLLVATLVMGVGLTACGSLDNSSMQSSTNNVTGKKNKKNNYQTTGSASGSYAGVIKNGKYVTSKSRGLTADQN GNVNNTKSFESGLQDISKKIFPTSQYVFQEGQYLSSDTVQNWLDRESKSNPEGLNPKDNGSKDPDKRNPIYLQALEEQDY MEKSGTSLKLKGVTIGLAMNSVDYYQKEQYGAQYETKISDAEIKAKSQEIAQKVLERLRKKSEFKNVPIVIAVYKQASND SLVGGTFMRYSNNSGEKLAKWKDLDYKNVVYPISDTETSPNSNDSSAFDNFKTQVESFFPNLSGITAKARYDGKSMEGMS VSITTQFYSETEINSFTQFVSTQAEKYLPSGVNIDITIKSTDEVQSFLSRSAKEKTFSSHVFSSY
Specific function: Unknown
COG id: COG4851
COG function: function code R; Protein involved in sex pheromone biosynthesis
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011426 [H]
Pfam domain/function: PF07537 CamS [H]
EC number: NA
Molecular weight: Translated: 42604; Mature: 42604
Theoretical pI: Translated: 9.24; Mature: 9.24
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVTKKLSLLVATLVMGVGLTACGSLDNSSMQSSTNNVTGKKNKKNNYQTTGSASGSYAG CCHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE VIKNGKYVTSKSRGLTADQNGNVNNTKSFESGLQDISKKIFPTSQYVFQEGQYLSSDTVQ EEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHH NWLDRESKSNPEGLNPKDNGSKDPDKRNPIYLQALEEQDYMEKSGTSLKLKGVTIGLAMN HHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHCCCEEEEEEEEEEEEEC SVDYYQKEQYGAQYETKISDAEIKAKSQEIAQKVLERLRKKSEFKNVPIVIAVYKQASND CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC SLVGGTFMRYSNNSGEKLAKWKDLDYKNVVYPISDTETSPNSNDSSAFDNFKTQVESFFP CEECCEEEEECCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC NLSGITAKARYDGKSMEGMSVSITTQFYSETEINSFTQFVSTQAEKYLPSGVNIDITIKS CCCCCEEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC TDEVQSFLSRSAKEKTFSSHVFSSY HHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNVTKKLSLLVATLVMGVGLTACGSLDNSSMQSSTNNVTGKKNKKNNYQTTGSASGSYAG CCHHHHHHHHHHHHHHHCCHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE VIKNGKYVTSKSRGLTADQNGNVNNTKSFESGLQDISKKIFPTSQYVFQEGQYLSSDTVQ EEECCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHH NWLDRESKSNPEGLNPKDNGSKDPDKRNPIYLQALEEQDYMEKSGTSLKLKGVTIGLAMN HHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHCCCEEEEEEEEEEEEEC SVDYYQKEQYGAQYETKISDAEIKAKSQEIAQKVLERLRKKSEFKNVPIVIAVYKQASND CHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC SLVGGTFMRYSNNSGEKLAKWKDLDYKNVVYPISDTETSPNSNDSSAFDNFKTQVESFFP CEECCEEEEECCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC NLSGITAKARYDGKSMEGMSVSITTQFYSETEINSFTQFVSTQAEKYLPSGVNIDITIKS CCCCCEEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC TDEVQSFLSRSAKEKTFSSHVFSSY HHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9701819; 9384377 [H]