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The map label for this gene is atpH

Identifier: 116493068

GI number: 116493068

Start: 1309797

End: 1310339

Strand: Reverse

Name: atpH

Synonym: PEPE_1320

Alternate gene names: 116493068

Gene position: 1310339-1309797 (Counterclockwise)

Preceding gene: 116493069

Following gene: 116493067

Centisome position: 71.51

GC content: 33.52

Gene sequence:

>543_bases
ATGAGTTTAGATAAAACAACAATTGCTAAGCGTTATTCAAAAGCCCTCTTTGAAATTGTTTCTGAAAAAGGACAACGCGA
TGAAACACGTGCTGAACTAAATCAGATTCAACAAGTTTTTAATGATAATGAAGGATTAGGCAAAATTTTAACTGACAAAG
GTTTGGAGCAAAATCAAAAGCTTGAAATTCTCAATATTCTGACTAAAGATGCTTCAAATTACGTTGGAAATCTCATCAAA
ATGACTTTTGATTATGGTCGTATGGACTATTTGACAGCGATTATTGATGAGTTTAACAACTTGTGTGACGCTGATGAAAA
AATCGTTCGAGCAAAAGTTGTTTCTGCTATCCCATTAAGTGATCAACAACTTGATAAAATGGCAGAACAATTCGCTAAAC
GTTTAAAAGTTAGTGAAGTTGTCTTAGATAGTGAAGTTGATGATTCAATCATCGGTGGAGCTATCATCAAAACAGATAGT
TTGATCTACGATGGTAGTATTCAGACTCAAATTAATCAAATTAGACAGCGCCTAATAGGTTAG

Upstream 100 bases:

>100_bases
TATCTATTGAGATTGCTTCCAAAGTTATCAAAAAAGAACTTGATGAAAACAGTCAAAAGGATTTGATTGATTCATACATC
GAAGGTTTGGGTGATAGCAA

Downstream 100 bases:

>100_bases
CTCGATATTTGTAAAGAGGTGAAACTTTTATGAGCATTAAGGCTGAGGAAATCAGTGCTCTAATCAAACAGCAATTAGAA
AACTACCAAGCTGAGCTTAA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSLDKTTIAKRYSKALFEIVSEKGQRDETRAELNQIQQVFNDNEGLGKILTDKGLEQNQKLEILNILTKDASNYVGNLIK
MTFDYGRMDYLTAIIDEFNNLCDADEKIVRAKVVSAIPLSDQQLDKMAEQFAKRLKVSEVVLDSEVDDSIIGGAIIKTDS
LIYDGSIQTQINQIRQRLIG

Sequences:

>Translated_180_residues
MSLDKTTIAKRYSKALFEIVSEKGQRDETRAELNQIQQVFNDNEGLGKILTDKGLEQNQKLEILNILTKDASNYVGNLIK
MTFDYGRMDYLTAIIDEFNNLCDADEKIVRAKVVSAIPLSDQQLDKMAEQFAKRLKVSEVVLDSEVDDSIIGGAIIKTDS
LIYDGSIQTQINQIRQRLIG
>Mature_179_residues
SLDKTTIAKRYSKALFEIVSEKGQRDETRAELNQIQQVFNDNEGLGKILTDKGLEQNQKLEILNILTKDASNYVGNLIKM
TFDYGRMDYLTAIIDEFNNLCDADEKIVRAKVVSAIPLSDQQLDKMAEQFAKRLKVSEVVLDSEVDDSIIGGAIIKTDSL
IYDGSIQTQINQIRQRLIG

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=168, Percent_Identity=25.5952380952381, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_PEDPA (Q03EL1)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804803.1
- ProteinModelPortal:   Q03EL1
- STRING:   Q03EL1
- GeneID:   4417007
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_1320
- NMPDR:   fig|278197.10.peg.1158
- eggNOG:   COG0712
- HOGENOM:   HBG668108
- OMA:   GNLIENY
- PhylomeDB:   Q03EL1
- ProtClustDB:   PRK05758
- BioCyc:   PPEN278197:PEPE_1320-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 20291; Mature: 20160

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDKTTIAKRYSKALFEIVSEKGQRDETRAELNQIQQVFNDNEGLGKILTDKGLEQNQK
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCH
LEILNILTKDASNYVGNLIKMTFDYGRMDYLTAIIDEFNNLCDADEKIVRAKVVSAIPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
DQQLDKMAEQFAKRLKVSEVVLDSEVDDSIIGGAIIKTDSLIYDGSIQTQINQIRQRLIG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHEECCCEEECCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLDKTTIAKRYSKALFEIVSEKGQRDETRAELNQIQQVFNDNEGLGKILTDKGLEQNQK
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCH
LEILNILTKDASNYVGNLIKMTFDYGRMDYLTAIIDEFNNLCDADEKIVRAKVVSAIPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
DQQLDKMAEQFAKRLKVSEVVLDSEVDDSIIGGAIIKTDSLIYDGSIQTQINQIRQRLIG
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHEECCCEEECCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA