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The map label for this gene is ymfF [H]

Identifier: 116493030

GI number: 116493030

Start: 1272446

End: 1273699

Strand: Reverse

Name: ymfF [H]

Synonym: PEPE_1282

Alternate gene names: 116493030

Gene position: 1273699-1272446 (Counterclockwise)

Preceding gene: 116493031

Following gene: 116493029

Centisome position: 69.51

GC content: 36.76

Gene sequence:

>1254_bases
TTGGATGTTCAAAATCAGTCTGGGATTCAGACTTTAGTTTTACCAAGTAAAAAATTTAAAACTGTGCGCATTGACGTACA
TTTTTTGAAATACGCAACGATTAAAGATTTAGCCCAACGCTCTTTAATTGCTAATATTTTAGATACAAGTACTAAAAAGT
ATCCAGATCAAGTTCGGTTTACGCATGCTCTATCGGAAATGTTCGGCGCTAGCTTTGGTGGAGGTGCTGCTAAAAAAGGT
AATATGCATGATGTAGCTTTCTCAATGGTAGTTGCTAATGATAAATATATTAAGCACCAAAACTTAATTCAAGATGCGAT
TCGCTTTTTGAATGAAGTGATTGTTCATCCACTAGCAGATGGTAAGCAATTTGATGAAGAAACATTCCAACGTCAAAAGC
AAAATATGTTAAATTATGTTAAATCGGCAACAGAAGATAAGCAGTATTGGTCCGCGCAACAATTACGTAAACTAACTTTC
GGTCAGACCGTGGTACAAGGTATTCCAAGCTATGGATTAGTAGAAGATTTAGAGAACCTAAAAAATGCAGAAACCTACCG
AGCTTATTTGGATATGCTTAAAAATGATTTAGTGCATATTAGTGTTTCAGGGGACGTCAATCAAGAAGAGATTGAGGAAG
ATTTAAAGATTTTTGAATTAGATGAACGCCAATTTGATTTAAAACCTTTAATTACACATTTCGATGCACGGGAGAAAGCT
ATCGTTAAGGCTGAACATCAAGATGTACGCCAAGCACGCTTAAACTTATCTTTCAATATTCCGGCTGATATGACTGGAGA
GAACTTTTTTACGGCAGTCGTATTTAATGCTTTATTCGGCGGATCACCACAATCTAAGTTGTTTGTTAACGTGCGCGAAA
AAGCCAGCTTGGCCTACTATGCTAGTTCGAGTTTAGATTTATATGACGGAATCTTAAATATCCAGACAGGTATTAATGGC
GGGAACCATGATGCTGCAATGCAAATTATTCAACAACAACTCCAAGACATGCAAAATGGGCTCTTTACTGAAAGCGAACT
TGCTAACATTAAAAAAGGACTACAATCAGATTATCTTTCGGGGATGGACTTGCAAAGAACCGCACATCGGCGTGGATTAA
ATGATTATCTGTTAAATCGACATTGGTCGACGGAAGAGTGGCTAACCCAGATTAATGCAGTGTCTAAAAAGGATATTGAA
CAATTAGCTCAGCAAATTAAAATTCGAGCTGAATATTTCTTGAGTGGAGAATAA

Upstream 100 bases:

>100_bases
TTGGCTAGTCGTTTGATTTCACCAATTCTTTAATTAACATTGAAAAGTGTGCGAAATTTCGCTAACATTAATCGCATGTG
AAAAAGTAGGAGGCATCATA

Downstream 100 bases:

>100_bases
TTTGAATGAATAAAAAAGTATATCAAGCGTTCAATGAATGCTTATTTTCAACCGTTCTTTCCAACGGTTTAAAAGTTAAT
ATTTTACCCAAAACTGGATT

Product: Zn-dependent peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MDVQNQSGIQTLVLPSKKFKTVRIDVHFLKYATIKDLAQRSLIANILDTSTKKYPDQVRFTHALSEMFGASFGGGAAKKG
NMHDVAFSMVVANDKYIKHQNLIQDAIRFLNEVIVHPLADGKQFDEETFQRQKQNMLNYVKSATEDKQYWSAQQLRKLTF
GQTVVQGIPSYGLVEDLENLKNAETYRAYLDMLKNDLVHISVSGDVNQEEIEEDLKIFELDERQFDLKPLITHFDAREKA
IVKAEHQDVRQARLNLSFNIPADMTGENFFTAVVFNALFGGSPQSKLFVNVREKASLAYYASSSLDLYDGILNIQTGING
GNHDAAMQIIQQQLQDMQNGLFTESELANIKKGLQSDYLSGMDLQRTAHRRGLNDYLLNRHWSTEEWLTQINAVSKKDIE
QLAQQIKIRAEYFLSGE

Sequences:

>Translated_417_residues
MDVQNQSGIQTLVLPSKKFKTVRIDVHFLKYATIKDLAQRSLIANILDTSTKKYPDQVRFTHALSEMFGASFGGGAAKKG
NMHDVAFSMVVANDKYIKHQNLIQDAIRFLNEVIVHPLADGKQFDEETFQRQKQNMLNYVKSATEDKQYWSAQQLRKLTF
GQTVVQGIPSYGLVEDLENLKNAETYRAYLDMLKNDLVHISVSGDVNQEEIEEDLKIFELDERQFDLKPLITHFDAREKA
IVKAEHQDVRQARLNLSFNIPADMTGENFFTAVVFNALFGGSPQSKLFVNVREKASLAYYASSSLDLYDGILNIQTGING
GNHDAAMQIIQQQLQDMQNGLFTESELANIKKGLQSDYLSGMDLQRTAHRRGLNDYLLNRHWSTEEWLTQINAVSKKDIE
QLAQQIKIRAEYFLSGE
>Mature_417_residues
MDVQNQSGIQTLVLPSKKFKTVRIDVHFLKYATIKDLAQRSLIANILDTSTKKYPDQVRFTHALSEMFGASFGGGAAKKG
NMHDVAFSMVVANDKYIKHQNLIQDAIRFLNEVIVHPLADGKQFDEETFQRQKQNMLNYVKSATEDKQYWSAQQLRKLTF
GQTVVQGIPSYGLVEDLENLKNAETYRAYLDMLKNDLVHISVSGDVNQEEIEEDLKIFELDERQFDLKPLITHFDAREKA
IVKAEHQDVRQARLNLSFNIPADMTGENFFTAVVFNALFGGSPQSKLFVNVREKASLAYYASSSLDLYDGILNIQTGING
GNHDAAMQIIQQQLQDMQNGLFTESELANIKKGLQSDYLSGMDLQRTAHRRGLNDYLLNRHWSTEEWLTQINAVSKKDIE
QLAQQIKIRAEYFLSGE

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR007863 [H]

Pfam domain/function: PF05193 Peptidase_M16_C [H]

EC number: NA

Molecular weight: Translated: 47471; Mature: 47471

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVQNQSGIQTLVLPSKKFKTVRIDVHFLKYATIKDLAQRSLIANILDTSTKKYPDQVRF
CCCCCCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
THALSEMFGASFGGGAAKKGNMHDVAFSMVVANDKYIKHQNLIQDAIRFLNEVIVHPLAD
HHHHHHHHCCCCCCCCCCCCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
GKQFDEETFQRQKQNMLNYVKSATEDKQYWSAQQLRKLTFGQTVVQGIPSYGLVEDLENL
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KNAETYRAYLDMLKNDLVHISVSGDVNQEEIEEDLKIFELDERQFDLKPLITHFDAREKA
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHEEECCCCCCCHHHHHHHCCCHHHH
IVKAEHQDVRQARLNLSFNIPADMTGENFFTAVVFNALFGGSPQSKLFVNVREKASLAYY
HHHHHHHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHCEEEEE
ASSSLDLYDGILNIQTGINGGNHDAAMQIIQQQLQDMQNGLFTESELANIKKGLQSDYLS
ECCCCHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
GMDLQRTAHRRGLNDYLLNRHWSTEEWLTQINAVSKKDIEQLAQQIKIRAEYFLSGE
CCCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC
>Mature Secondary Structure
MDVQNQSGIQTLVLPSKKFKTVRIDVHFLKYATIKDLAQRSLIANILDTSTKKYPDQVRF
CCCCCCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
THALSEMFGASFGGGAAKKGNMHDVAFSMVVANDKYIKHQNLIQDAIRFLNEVIVHPLAD
HHHHHHHHCCCCCCCCCCCCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC
GKQFDEETFQRQKQNMLNYVKSATEDKQYWSAQQLRKLTFGQTVVQGIPSYGLVEDLENL
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
KNAETYRAYLDMLKNDLVHISVSGDVNQEEIEEDLKIFELDERQFDLKPLITHFDAREKA
HHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHEEECCCCCCCHHHHHHHCCCHHHH
IVKAEHQDVRQARLNLSFNIPADMTGENFFTAVVFNALFGGSPQSKLFVNVREKASLAYY
HHHHHHHHHHHHHHCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEHHHCEEEEE
ASSSLDLYDGILNIQTGINGGNHDAAMQIIQQQLQDMQNGLFTESELANIKKGLQSDYLS
ECCCCHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
GMDLQRTAHRRGLNDYLLNRHWSTEEWLTQINAVSKKDIEQLAQQIKIRAEYFLSGE
CCCHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]