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The map label for this gene is ymfH [H]

Identifier: 116493029

GI number: 116493029

Start: 1271148

End: 1272440

Strand: Reverse

Name: ymfH [H]

Synonym: PEPE_1281

Alternate gene names: 116493029

Gene position: 1272440-1271148 (Counterclockwise)

Preceding gene: 116493030

Following gene: 116493028

Centisome position: 69.44

GC content: 34.11

Gene sequence:

>1293_bases
ATGAATAAAAAAGTATATCAAGCGTTCAATGAATGCTTATTTTCAACCGTTCTTTCCAACGGTTTAAAAGTTAATATTTT
ACCCAAAACTGGATTTAAAAAAACATACGCCGTTTTAACTACTGATTTTGGATCAATGGATCGAGCATTCACTTTAGATG
GTGAAAAAATTCAGATTCCCGCCGGCACGGCACACTTTTTAGAACATAAACTTTTTGAAAAGGCGGAATACGATGCATTT
GAATTGTTCACTAATAACGGAGCAGATTCCAATGCATTTACAAGCTATACCAAGACTAGTTATCTATTTTCTTCAACGAC
TGGATTACAAGAGAATTTAGATATTTTGTTAGATTTTGTTCAACAGCCATATTTTTCGGAGAAGTCAGTTGCTAAAGAAC
AAGGAATTATTGGACAAGAAATTCAGATGTATAATGACGATTTTGATTGGCAATTATACATGGGAATTTTAAAGAATCTC
TTCCCCAATCAATCCATTAGTGACGACATTGCCGGAACCGTGGAATCAATTGCTAAAATTACTCCGGAGTTGTTGTACAA
AGTACATAAAGTGTTTTACCGTCCCGAAAATATGAATTTATTTGTTACTGGGAACCTAGATCCGGATCAGATCCTTCAAT
GGATTAAGGATAATCAGCAACGAAAAGAGTTTGCAAAAGTTAACTTTGAAATTCCTACTCCAGAATCCGATGATGATGAG
ATTATCGAAAATCGTGCATTATTGACTAAGGTTGAACGTCCTAAAGTTATGTTAGGAGTTAAAAATGCTAAAGCATTGCC
TCAACCTGGTATTGAACGTCTAAGATTCATTATTACGCTTGATTTGGCGTTATATTTAATCTTAAGTTCATCTTCTAGAT
TATATTTAGAATTGTATGATGAAGGGCTTTTGGACGACACTTTTGGATACGATTTAAATAGTGAAAGAGAAGCCTTGTTC
CTAACTTTGGGCGGTGACACCAACCATCCTACTGAATTGATACAAGCCTTAAAAGATATTTTGACAACTGTTTTAATGAA
GTCGGATGCGCTCCTCAAAGATTTCGAGCTAGCTAAAAAAGAAATGTATGGAAGAAGTATTACTAGGATGAATTCTTTGG
AAGCTATTGCTAATTCATTTGAAGGTGAAAACTATGGAAATACGACAATTTTTGATGAAGCAATGCTTTATCAAGATATC
TCTTTAGACGAAGTAATTAATACTTTCGATACCTTTATGAAAAATGTTGTTATCAGTACGTTTAAAATGGATAGTGAGCA
GGCGAAGAAATGA

Upstream 100 bases:

>100_bases
GGCTAACCCAGATTAATGCAGTGTCTAAAAAGGATATTGAACAATTAGCTCAGCAAATTAAAATTCGAGCTGAATATTTC
TTGAGTGGAGAATAATTTGA

Downstream 100 bases:

>100_bases
AATTTGCATTAATTTGTGGAGCAAGCGGCAATATCGGAACAGCGATTAGCAAAGATTTGGCTCAAAAGGGATGGTCACTT
TACTTACATTATTATCAAAA

Product: Zn-dependent peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MNKKVYQAFNECLFSTVLSNGLKVNILPKTGFKKTYAVLTTDFGSMDRAFTLDGEKIQIPAGTAHFLEHKLFEKAEYDAF
ELFTNNGADSNAFTSYTKTSYLFSSTTGLQENLDILLDFVQQPYFSEKSVAKEQGIIGQEIQMYNDDFDWQLYMGILKNL
FPNQSISDDIAGTVESIAKITPELLYKVHKVFYRPENMNLFVTGNLDPDQILQWIKDNQQRKEFAKVNFEIPTPESDDDE
IIENRALLTKVERPKVMLGVKNAKALPQPGIERLRFIITLDLALYLILSSSSRLYLELYDEGLLDDTFGYDLNSEREALF
LTLGGDTNHPTELIQALKDILTTVLMKSDALLKDFELAKKEMYGRSITRMNSLEAIANSFEGENYGNTTIFDEAMLYQDI
SLDEVINTFDTFMKNVVISTFKMDSEQAKK

Sequences:

>Translated_430_residues
MNKKVYQAFNECLFSTVLSNGLKVNILPKTGFKKTYAVLTTDFGSMDRAFTLDGEKIQIPAGTAHFLEHKLFEKAEYDAF
ELFTNNGADSNAFTSYTKTSYLFSSTTGLQENLDILLDFVQQPYFSEKSVAKEQGIIGQEIQMYNDDFDWQLYMGILKNL
FPNQSISDDIAGTVESIAKITPELLYKVHKVFYRPENMNLFVTGNLDPDQILQWIKDNQQRKEFAKVNFEIPTPESDDDE
IIENRALLTKVERPKVMLGVKNAKALPQPGIERLRFIITLDLALYLILSSSSRLYLELYDEGLLDDTFGYDLNSEREALF
LTLGGDTNHPTELIQALKDILTTVLMKSDALLKDFELAKKEMYGRSITRMNSLEAIANSFEGENYGNTTIFDEAMLYQDI
SLDEVINTFDTFMKNVVISTFKMDSEQAKK
>Mature_430_residues
MNKKVYQAFNECLFSTVLSNGLKVNILPKTGFKKTYAVLTTDFGSMDRAFTLDGEKIQIPAGTAHFLEHKLFEKAEYDAF
ELFTNNGADSNAFTSYTKTSYLFSSTTGLQENLDILLDFVQQPYFSEKSVAKEQGIIGQEIQMYNDDFDWQLYMGILKNL
FPNQSISDDIAGTVESIAKITPELLYKVHKVFYRPENMNLFVTGNLDPDQILQWIKDNQQRKEFAKVNFEIPTPESDDDE
IIENRALLTKVERPKVMLGVKNAKALPQPGIERLRFIITLDLALYLILSSSSRLYLELYDEGLLDDTFGYDLNSEREALF
LTLGGDTNHPTELIQALKDILTTVLMKSDALLKDFELAKKEMYGRSITRMNSLEAIANSFEGENYGNTTIFDEAMLYQDI
SLDEVINTFDTFMKNVVISTFKMDSEQAKK

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1787770, Length=223, Percent_Identity=28.6995515695067, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 49021; Mature: 49021

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKVYQAFNECLFSTVLSNGLKVNILPKTGFKKTYAVLTTDFGSMDRAFTLDGEKIQIP
CCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCEEEEC
AGTAHFLEHKLFEKAEYDAFELFTNNGADSNAFTSYTKTSYLFSSTTGLQENLDILLDFV
CCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHH
QQPYFSEKSVAKEQGIIGQEIQMYNDDFDWQLYMGILKNLFPNQSISDDIAGTVESIAKI
HCCCCCCHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
TPELLYKVHKVFYRPENMNLFVTGNLDPDQILQWIKDNQQRKEFAKVNFEIPTPESDDDE
CHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHEEEECCCCCCCCHH
IIENRALLTKVERPKVMLGVKNAKALPQPGIERLRFIITLDLALYLILSSSSRLYLELYD
HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
EGLLDDTFGYDLNSEREALFLTLGGDTNHPTELIQALKDILTTVLMKSDALLKDFELAKK
CCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EMYGRSITRMNSLEAIANSFEGENYGNTTIFDEAMLYQDISLDEVINTFDTFMKNVVIST
HHHCHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FKMDSEQAKK
HCCCHHHHCC
>Mature Secondary Structure
MNKKVYQAFNECLFSTVLSNGLKVNILPKTGFKKTYAVLTTDFGSMDRAFTLDGEKIQIP
CCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCEEEECCCEEEEC
AGTAHFLEHKLFEKAEYDAFELFTNNGADSNAFTSYTKTSYLFSSTTGLQENLDILLDFV
CCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHH
QQPYFSEKSVAKEQGIIGQEIQMYNDDFDWQLYMGILKNLFPNQSISDDIAGTVESIAKI
HCCCCCCHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
TPELLYKVHKVFYRPENMNLFVTGNLDPDQILQWIKDNQQRKEFAKVNFEIPTPESDDDE
CHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCHHHHHHHHEEEECCCCCCCCHH
IIENRALLTKVERPKVMLGVKNAKALPQPGIERLRFIITLDLALYLILSSSSRLYLELYD
HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
EGLLDDTFGYDLNSEREALFLTLGGDTNHPTELIQALKDILTTVLMKSDALLKDFELAKK
CCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
EMYGRSITRMNSLEAIANSFEGENYGNTTIFDEAMLYQDISLDEVINTFDTFMKNVVIST
HHHCHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
FKMDSEQAKK
HCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]