| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is cocE [H]
Identifier: 116492807
GI number: 116492807
Start: 1036457
End: 1038217
Strand: Direct
Name: cocE [H]
Synonym: PEPE_1044
Alternate gene names: 116492807
Gene position: 1036457-1038217 (Clockwise)
Preceding gene: 116492803
Following gene: 116492808
Centisome position: 56.56
GC content: 40.49
Gene sequence:
>1761_bases ATGACTGTTGATGTTACGAAAGAAATGCAATTTAGTGATGCTTTTGCATATATTGATGATGGTGTAGAACATGGTGTCCT TAGCCCATTTGAAACCAAAGAATTAATCCTAAAGAAAGGCGAAAAAATCGCCGATGGATTTAAACCACTTGATACTGATA TTAAAATGTTAAAAGATATCCCTGTTAAATTACGAGATGGAGTAACCATTTATACCGATATTTATTTACCAATTACAAAT GACAAAGTTCCTACCTTAATTGCTTGGAGCCCTTATGGTAAAAGCGCTGGAACTGCACCAAGATATAAAAATCTTTTTAA CATGCTTGGAATGGGTAATCAATGGAATTCTGGATTGACTAAATTTGAGGCACCTGATCCAGCCTACTGGACTCGTCATG GATATGCAGTGGCTAACCCCGATATGCGTGGAATCGCTCATAGCGAAGGAAATACAACGATGCTTGGTTCACAAGAAGCT CAGGATGGTTATGATTTAATTGAATGGATTGCCCAACAAGATTGGTCCAACGGTAAGACGGCCCTAACTGGTACTTCCTA TTTAGCTTGGTCACAATGGTTTATTGCTGCTGAAAGACCACCACATTTAACTGCAATTAATCCTACCGAAGGTTTATCAG ATGCATATCGTGACTTGGCCTTTATCGGAGGAATTCCTGACAAAAACTTTATTGAACGCTTAGCCGTAAATCATGTCAGT GCAAATGATGCCAAACGTGAGGATTTAGCTAAAGAAATGGATGCTGATCCGTTAGTTACGGCTCCCGTTTGGCAAGACAA AATTGCAGATACCAGCAAAATTGAAGTTCCCGCTTTTGTGATTGGCAGTTATTCCAACACATTGCATACCATGGGAACAT TCCGAGCTTGGCGCACCTTAGGATCTAAAGATAAATGGCTCAGAATTCATGATCGTCAAGAATGGCCTTATTACTACGAT AAAAATAATACGGAAGAACTTCGTCGTTTCTTTGACCACTATTTACTTGGCAAAGAAAATGGATGGGAAAATACAGCTCC TGTTCGCTACACTACCATTGGTTTTCAAGGCAAAAATGAGACAGATATTCCAGCAACTAGCTTTCCACCAGCTGGTGTGA ATAACCAACCATTTTATCTCAACCCCTTAACTCGGACTTTGCAAGAAAAGCCTTTGTCACAGGCTGCCACAGTGCAGTAT GTAGCTAACGACAATCCTGGACGTGTCTCATTTTTAACTACTTTCGATGCGCCGGTCACGATGGTCGGTTATCCTAAGGC AAAGCTATTCATGGAAGTCGACGGTTACGATGATATGGATATCTTTATCATGGTACAAAAATTAGACAAATACAGTAATG TGTTAAGTGAGTTCGTTGTACCTAATCACGGTGCAGCCCTCCAAGACTTTACTCAAGAAAGTGCCTCGGCCCTACGTTAT AAAGGAGTCTGGGGCCGTCTACGAGCTTCAATGCGTCATTTAGATGATAAGATGAGCACGGATGAGATTCCTGCATATTC ATTTGATCGCGTTGAAAAGTTGGCACCAAAAGAAATTGTCCAATTAGATGTTGTTTTAAGCCCAATGGGGATGACTTTTG CTCCTGGCGAATCGTTACGTTTTGTAATCAGTTCCAAGAATGAATTAGGTTCTGTTATGCCAGGGACTCCTGGTGCTACC CCTGACAATCAAGGTATCCATATCCTTCATACCGGTGGCAAATATGATTCCTATTTACAATTACCTATCTTAAAAAAATA G
Upstream 100 bases:
>100_bases CCTTCTAAACTTGCAAATATGATAGTGTACAGAAGTTCTCCCCCCTCATATACTTTAGTTTGTTAAATCAAACTTACTAA AAATATTTGGAGGTAAAGTT
Downstream 100 bases:
>100_bases AAAAGAATTTAGTTGCTTAACTAAAGGATTTGTAGTATTAATGACTATAAATCCTTTTTTTGATTGGAGTCACAATGAAT TTAACAACATTAGAATACTT
Product: acyl esterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 586; Mature: 585
Protein sequence:
>586_residues MTVDVTKEMQFSDAFAYIDDGVEHGVLSPFETKELILKKGEKIADGFKPLDTDIKMLKDIPVKLRDGVTIYTDIYLPITN DKVPTLIAWSPYGKSAGTAPRYKNLFNMLGMGNQWNSGLTKFEAPDPAYWTRHGYAVANPDMRGIAHSEGNTTMLGSQEA QDGYDLIEWIAQQDWSNGKTALTGTSYLAWSQWFIAAERPPHLTAINPTEGLSDAYRDLAFIGGIPDKNFIERLAVNHVS ANDAKREDLAKEMDADPLVTAPVWQDKIADTSKIEVPAFVIGSYSNTLHTMGTFRAWRTLGSKDKWLRIHDRQEWPYYYD KNNTEELRRFFDHYLLGKENGWENTAPVRYTTIGFQGKNETDIPATSFPPAGVNNQPFYLNPLTRTLQEKPLSQAATVQY VANDNPGRVSFLTTFDAPVTMVGYPKAKLFMEVDGYDDMDIFIMVQKLDKYSNVLSEFVVPNHGAALQDFTQESASALRY KGVWGRLRASMRHLDDKMSTDEIPAYSFDRVEKLAPKEIVQLDVVLSPMGMTFAPGESLRFVISSKNELGSVMPGTPGAT PDNQGIHILHTGGKYDSYLQLPILKK
Sequences:
>Translated_586_residues MTVDVTKEMQFSDAFAYIDDGVEHGVLSPFETKELILKKGEKIADGFKPLDTDIKMLKDIPVKLRDGVTIYTDIYLPITN DKVPTLIAWSPYGKSAGTAPRYKNLFNMLGMGNQWNSGLTKFEAPDPAYWTRHGYAVANPDMRGIAHSEGNTTMLGSQEA QDGYDLIEWIAQQDWSNGKTALTGTSYLAWSQWFIAAERPPHLTAINPTEGLSDAYRDLAFIGGIPDKNFIERLAVNHVS ANDAKREDLAKEMDADPLVTAPVWQDKIADTSKIEVPAFVIGSYSNTLHTMGTFRAWRTLGSKDKWLRIHDRQEWPYYYD KNNTEELRRFFDHYLLGKENGWENTAPVRYTTIGFQGKNETDIPATSFPPAGVNNQPFYLNPLTRTLQEKPLSQAATVQY VANDNPGRVSFLTTFDAPVTMVGYPKAKLFMEVDGYDDMDIFIMVQKLDKYSNVLSEFVVPNHGAALQDFTQESASALRY KGVWGRLRASMRHLDDKMSTDEIPAYSFDRVEKLAPKEIVQLDVVLSPMGMTFAPGESLRFVISSKNELGSVMPGTPGAT PDNQGIHILHTGGKYDSYLQLPILKK >Mature_585_residues TVDVTKEMQFSDAFAYIDDGVEHGVLSPFETKELILKKGEKIADGFKPLDTDIKMLKDIPVKLRDGVTIYTDIYLPITND KVPTLIAWSPYGKSAGTAPRYKNLFNMLGMGNQWNSGLTKFEAPDPAYWTRHGYAVANPDMRGIAHSEGNTTMLGSQEAQ DGYDLIEWIAQQDWSNGKTALTGTSYLAWSQWFIAAERPPHLTAINPTEGLSDAYRDLAFIGGIPDKNFIERLAVNHVSA NDAKREDLAKEMDADPLVTAPVWQDKIADTSKIEVPAFVIGSYSNTLHTMGTFRAWRTLGSKDKWLRIHDRQEWPYYYDK NNTEELRRFFDHYLLGKENGWENTAPVRYTTIGFQGKNETDIPATSFPPAGVNNQPFYLNPLTRTLQEKPLSQAATVQYV ANDNPGRVSFLTTFDAPVTMVGYPKAKLFMEVDGYDDMDIFIMVQKLDKYSNVLSEFVVPNHGAALQDFTQESASALRYK GVWGRLRASMRHLDDKMSTDEIPAYSFDRVEKLAPKEIVQLDVVLSPMGMTFAPGESLRFVISSKNELGSVMPGTPGATP DNQGIHILHTGGKYDSYLQLPILKK
Specific function: Hydrolyzes cocaine to benzoate and ecgonine methyl ester, endowing the bacteria with the ability to utilize cocaine as a sole source of carbon and energy for growth, as this bacterium lives in the rhizosphere of coca plants [H]
COG id: COG2936
COG function: function code R; Predicted acyl esterases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the alpha/beta hydrolase family. Carboxylesterase subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005674 - InterPro: IPR008979 - InterPro: IPR013736 - InterPro: IPR000383 [H]
Pfam domain/function: PF02129 Peptidase_S15; PF08530 PepX_C [H]
EC number: NA
Molecular weight: Translated: 65739; Mature: 65608
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVDVTKEMQFSDAFAYIDDGVEHGVLSPFETKELILKKGEKIADGFKPLDTDIKMLKDI CCCCCCCCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHCCCHHHCCCCCCCHHHHHHHCC PVKLRDGVTIYTDIYLPITNDKVPTLIAWSPYGKSAGTAPRYKNLFNMLGMGNQWNSGLT CEEECCCEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC KFEAPDPAYWTRHGYAVANPDMRGIAHSEGNTTMLGSQEAQDGYDLIEWIAQQDWSNGKT CCCCCCCCCCCCCCEEEECCCCCCEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCE ALTGTSYLAWSQWFIAAERPPHLTAINPTEGLSDAYRDLAFIGGIPDKNFIERLAVNHVS EEECCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCC ANDAKREDLAKEMDADPLVTAPVWQDKIADTSKIEVPAFVIGSYSNTLHTMGTFRAWRTL CCCHHHHHHHHHCCCCCCEECCCCHHHCCCCCCEECCEEEEECCCCHHHHHHHHHHHHHC GSKDKWLRIHDRQEWPYYYDKNNTEELRRFFDHYLLGKENGWENTAPVRYTTIGFQGKNE CCCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCC TDIPATSFPPAGVNNQPFYLNPLTRTLQEKPLSQAATVQYVANDNPGRVSFLTTFDAPVT CCCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCEE MVGYPKAKLFMEVDGYDDMDIFIMVQKLDKYSNVLSEFVVPNHGAALQDFTQESASALRY EEECCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH KGVWGRLRASMRHLDDKMSTDEIPAYSFDRVEKLAPKEIVQLDVVLSPMGMTFAPGESLR HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHEEEEEEECCCCCEECCCCCEE FVISSKNELGSVMPGTPGATPDNQGIHILHTGGKYDSYLQLPILKK EEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCC >Mature Secondary Structure TVDVTKEMQFSDAFAYIDDGVEHGVLSPFETKELILKKGEKIADGFKPLDTDIKMLKDI CCCCCCCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHCCCHHHCCCCCCCHHHHHHHCC PVKLRDGVTIYTDIYLPITNDKVPTLIAWSPYGKSAGTAPRYKNLFNMLGMGNQWNSGLT CEEECCCEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC KFEAPDPAYWTRHGYAVANPDMRGIAHSEGNTTMLGSQEAQDGYDLIEWIAQQDWSNGKT CCCCCCCCCCCCCCEEEECCCCCCEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCE ALTGTSYLAWSQWFIAAERPPHLTAINPTEGLSDAYRDLAFIGGIPDKNFIERLAVNHVS EEECCCCCEEEEEEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCC ANDAKREDLAKEMDADPLVTAPVWQDKIADTSKIEVPAFVIGSYSNTLHTMGTFRAWRTL CCCHHHHHHHHHCCCCCCEECCCCHHHCCCCCCEECCEEEEECCCCHHHHHHHHHHHHHC GSKDKWLRIHDRQEWPYYYDKNNTEELRRFFDHYLLGKENGWENTAPVRYTTIGFQGKNE CCCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCC TDIPATSFPPAGVNNQPFYLNPLTRTLQEKPLSQAATVQYVANDNPGRVSFLTTFDAPVT CCCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEECCCCEE MVGYPKAKLFMEVDGYDDMDIFIMVQKLDKYSNVLSEFVVPNHGAALQDFTQESASALRY EEECCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH KGVWGRLRASMRHLDDKMSTDEIPAYSFDRVEKLAPKEIVQLDVVLSPMGMTFAPGESLR HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHEEEEEEECCCCCEECCCCCEE FVISSKNELGSVMPGTPGATPDNQGIHILHTGGKYDSYLQLPILKK EEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10698749; 11742345; 12369817 [H]