| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is yegX [C]
Identifier: 116492382
GI number: 116492382
Start: 643413
End: 644186
Strand: Direct
Name: yegX [C]
Synonym: PEPE_0587
Alternate gene names: 116492382
Gene position: 643413-644186 (Clockwise)
Preceding gene: 116492381
Following gene: 116492384
Centisome position: 35.11
GC content: 41.09
Gene sequence:
>774_bases ATGGAGCGTAAAAGACATGCTAAGTATCGGCCTAAATTTAATATGCGATTTGTTCATCACCGTCGACGAATAATTTTAGG AGCTTTTCTGCTCGTGGTGCTACTAGCCATGGCTGGCGTCTGGGTAGTTAAAAATCAACAACGCGGAGCACGGTTGGCGC TAGCGCCGTATCCCGTTCATGGCTGTGTGATTGACCAGGAAAATGGCATTATCGATTTCAATTCCTTACAAAAGCAGCAC ATTTCATTTGTGTATCTCAATGCGACGACCGGGGCGACTTACTTTGATGATAGTTTTAATACAAATTATAGTCGAATTCA ATCGACTGATCTTAAAGTTGGTATTGTGCATAACTTTAGTTTCCAAAAGCGTCCCAAAGCCCAACTGCGTTTTATTAGTC AAAAGGTCAAGAGTAATACGGGACAGCTGCCCGTGGTGATTCGAGTGAGTTACTATGGGGATTATAATGCTAAGCGGGTT GATTGGAAAAAGGCGGGTCCAAATTTAGCTGACTTGGTTAAATTGCTAGCTAATTACTATGGACAGGCGGTTGTGATTAA GACGACGCCGGCCATCAAACGACAGCTAGATCCTACTTACATTAAACAAAGTAAGTTTTGGCTAGAAGAACCCCAGATTA AAAAACACAATTGGCGGGTTCAATTTGTCGAATACGATGCGGAACAAAAATTTAAAAATGATCATAGTGATTTAGAACTT CCCGTCTCCTATTTTAATGGTTCACAAAAGACTTGGAATGAACAAACCAACTAA
Upstream 100 bases:
>100_bases TGATCAATTCTACGCTGACTAACTAGTAGTAGGCTACCGAGTTAAACCGATTCGAATATTGGATTAGATTAGAGTACAAT ATTCAAAAAGGAGGTAGCCC
Downstream 100 bases:
>100_bases AAAGAGTTGTAGGCAACCGAACGGGGTTACTCACAACTCTTTATTTTTTTTAGATTCAATAATGGCATAGGTTTCGTTAT TTGCTTCGTCATAAATGCTG
Product: Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
Products: NA
Alternate protein names: Lysozyme; Cell-Wall Lytic; 1 4-Beta-N-Acetylmuramidase; Glycosyl Hydrolase Family; Extracellular Glycosyl Hydrolase; Glycosyl Transferase
Number of amino acids: Translated: 257; Mature: 257
Protein sequence:
>257_residues MERKRHAKYRPKFNMRFVHHRRRIILGAFLLVVLLAMAGVWVVKNQQRGARLALAPYPVHGCVIDQENGIIDFNSLQKQH ISFVYLNATTGATYFDDSFNTNYSRIQSTDLKVGIVHNFSFQKRPKAQLRFISQKVKSNTGQLPVVIRVSYYGDYNAKRV DWKKAGPNLADLVKLLANYYGQAVVIKTTPAIKRQLDPTYIKQSKFWLEEPQIKKHNWRVQFVEYDAEQKFKNDHSDLEL PVSYFNGSQKTWNEQTN
Sequences:
>Translated_257_residues MERKRHAKYRPKFNMRFVHHRRRIILGAFLLVVLLAMAGVWVVKNQQRGARLALAPYPVHGCVIDQENGIIDFNSLQKQH ISFVYLNATTGATYFDDSFNTNYSRIQSTDLKVGIVHNFSFQKRPKAQLRFISQKVKSNTGQLPVVIRVSYYGDYNAKRV DWKKAGPNLADLVKLLANYYGQAVVIKTTPAIKRQLDPTYIKQSKFWLEEPQIKKHNWRVQFVEYDAEQKFKNDHSDLEL PVSYFNGSQKTWNEQTN >Mature_257_residues MERKRHAKYRPKFNMRFVHHRRRIILGAFLLVVLLAMAGVWVVKNQQRGARLALAPYPVHGCVIDQENGIIDFNSLQKQH ISFVYLNATTGATYFDDSFNTNYSRIQSTDLKVGIVHNFSFQKRPKAQLRFISQKVKSNTGQLPVVIRVSYYGDYNAKRV DWKKAGPNLADLVKLLANYYGQAVVIKTTPAIKRQLDPTYIKQSKFWLEEPQIKKHNWRVQFVEYDAEQKFKNDHSDLEL PVSYFNGSQKTWNEQTN
Specific function: Unknown
COG id: COG3757
COG function: function code M; Lyzozyme M1 (1,4-beta-N-acetylmuramidase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29969; Mature: 29969
Theoretical pI: Translated: 10.49; Mature: 10.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERKRHAKYRPKFNMRFVHHRRRIILGAFLLVVLLAMAGVWVVKNQQRGARLALAPYPVH CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEECCCCCE GCVIDQENGIIDFNSLQKQHISFVYLNATTGATYFDDSFNTNYSRIQSTDLKVGIVHNFS EEEEECCCCEEEHHHHHCCCEEEEEEEECCCCEEECCCCCCCHHHEECCCEEEEEEECCC FQKRPKAQLRFISQKVKSNTGQLPVVIRVSYYGDYNAKRVDWKKAGPNLADLVKLLANYY CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEHHHCCCCHHHHHHHHHHHC GQAVVIKTTPAIKRQLDPTYIKQSKFWLEEPQIKKHNWRVQFVEYDAEQKFKNDHSDLEL CCEEEEEECHHHHHCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCCCEEE PVSYFNGSQKTWNEQTN EHHHCCCCCCCCCCCCC >Mature Secondary Structure MERKRHAKYRPKFNMRFVHHRRRIILGAFLLVVLLAMAGVWVVKNQQRGARLALAPYPVH CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEECCCCCE GCVIDQENGIIDFNSLQKQHISFVYLNATTGATYFDDSFNTNYSRIQSTDLKVGIVHNFS EEEEECCCCEEEHHHHHCCCEEEEEEEECCCCEEECCCCCCCHHHEECCCEEEEEEECCC FQKRPKAQLRFISQKVKSNTGQLPVVIRVSYYGDYNAKRVDWKKAGPNLADLVKLLANYY CCCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEHHHCCCCHHHHHHHHHHHC GQAVVIKTTPAIKRQLDPTYIKQSKFWLEEPQIKKHNWRVQFVEYDAEQKFKNDHSDLEL CCEEEEEECHHHHHCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCCCEEE PVSYFNGSQKTWNEQTN EHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA