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The map label for this gene is nifU [H]

Identifier: 116492290

GI number: 116492290

Start: 543003

End: 543443

Strand: Direct

Name: nifU [H]

Synonym: PEPE_0489

Alternate gene names: 116492290

Gene position: 543003-543443 (Clockwise)

Preceding gene: 116492289

Following gene: 116492291

Centisome position: 29.63

GC content: 39.91

Gene sequence:

>441_bases
ATGAGTAATATTCAAGAACTTTATCAAAAAATAATTGTAAATCATGCTAAGTATCCGATCGGAGTCGGAGTTTTACCGCA
ATATAATTACCACGCTAAATTGAAAAATCCTGATTGTGGGGATGATATTGAGGTTTATCTCAAGGTGGTGGATCAGCATT
TGGAACAGATTAGTTTTACGGGACAAGGGTGTATCATCAGTCAAGCTTCTGCCAGCATGATGGTGGATGCTTTGTCAGGC
AAGCGCATTTTAGAAGCGCAACAATTGATGCAAAATTTTCAGAACTTGATTCTGGGAAAAGATTATGATGAAAGCCAATT
AGGTGATTTAATCGCGTTTGCGACCCTCAACCAATTTCCAACGCGTGTTCGTTGTGGAATGCTAGCATGGCATGCAATGG
CAGATGGATTGAATCAAGGAGGAATCAGCTTTGGAAAGTGA

Upstream 100 bases:

>100_bases
GAGTAAGTAGCGTCGTCCGGGCCAGTGTTTCGTATATGAACACGACGAGGGATGTCGAACAGCTTTTAGCAGCAATGAAT
CAGGTGGGTCAAATTTTATT

Downstream 100 bases:

>100_bases
AAATCCACAGTTTGAAAAAGACCAATTAAGGGATGAACGTGGAGCGATGGATCCAGTCGCCCCCGTTTTTTCAACAGGAG
TGGGGATTGATGCTGAAACA

Product: Fe-S cluster formation protein, NifU-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MSNIQELYQKIIVNHAKYPIGVGVLPQYNYHAKLKNPDCGDDIEVYLKVVDQHLEQISFTGQGCIISQASASMMVDALSG
KRILEAQQLMQNFQNLILGKDYDESQLGDLIAFATLNQFPTRVRCGMLAWHAMADGLNQGGISFGK

Sequences:

>Translated_146_residues
MSNIQELYQKIIVNHAKYPIGVGVLPQYNYHAKLKNPDCGDDIEVYLKVVDQHLEQISFTGQGCIISQASASMMVDALSG
KRILEAQQLMQNFQNLILGKDYDESQLGDLIAFATLNQFPTRVRCGMLAWHAMADGLNQGGISFGK
>Mature_145_residues
SNIQELYQKIIVNHAKYPIGVGVLPQYNYHAKLKNPDCGDDIEVYLKVVDQHLEQISFTGQGCIISQASASMMVDALSGK
RILEAQQLMQNFQNLILGKDYDESQLGDLIAFATLNQFPTRVRCGMLAWHAMADGLNQGGISFGK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16207; Mature: 16076

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNIQELYQKIIVNHAKYPIGVGVLPQYNYHAKLKNPDCGDDIEVYLKVVDQHLEQISFT
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
GQGCIISQASASMMVDALSGKRILEAQQLMQNFQNLILGKDYDESQLGDLIAFATLNQFP
CCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
TRVRCGMLAWHAMADGLNQGGISFGK
HHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SNIQELYQKIIVNHAKYPIGVGVLPQYNYHAKLKNPDCGDDIEVYLKVVDQHLEQISFT
CHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
GQGCIISQASASMMVDALSGKRILEAQQLMQNFQNLILGKDYDESQLGDLIAFATLNQFP
CCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
TRVRCGMLAWHAMADGLNQGGISFGK
HHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]