Click here to switch to the map view.

The map label for this gene is sufB [H]

Identifier: 116492291

GI number: 116492291

Start: 543433

End: 544842

Strand: Direct

Name: sufB [H]

Synonym: PEPE_0490

Alternate gene names: 116492291

Gene position: 543433-544842 (Clockwise)

Preceding gene: 116492290

Following gene: 116492292

Centisome position: 29.66

GC content: 42.84

Gene sequence:

>1410_bases
TTGGAAAGTGAAAATCCACAGTTTGAAAAAGACCAATTAAGGGATGAACGTGGAGCGATGGATCCAGTCGCCCCCGTTTT
TTCAACAGGAGTGGGGATTGATGCTGAAACAATCAAGCAGATTTCTCAGGCTAAAAATGAACCGGCGTGGATGCTTGAAA
TTAGGTTGGCAGCTTATCAAACCTATTTAGACTTACCGATGCCCAAATTTGGTCCCGATTTGAATGGAATTGATTTGGAT
CAAATTAAGTATTTCCAACGTGCTACGGATCACATCGCTCGGGACTGGGAAGACGTTCCCAATGATATTAAGGCTACTTT
TGAGCGGATTGGTGTGCCGGAAGCTGAGCGTAAATATTTGGCGGGTTCCGCTGCACAATATGAATCAGAAGCCATTTATA
GTAATCTCAAAAAAGATTTGGAAAGCCAAGGGATTATTTTTATGGATACCGATTCGGCGCTTCAGAAACATCCAGATTTA
GTTCGCCAATATTTTGGAACACTGGTTCCTGCTGATGATAATAAGTTTGCAGCACTTAACACGGCGGTTTGGTCGGGTGG
TACCTTTTTGTATGTACCAAAGAATGTCCATGCTGATATTCCAATTCAAAGTTATTTTCGGATTAATGCTGGAAGAACTG
GTCAATTTGAACGAACGCTCATCATCGTTGAAAAAGGTGGGAGTGTTAATTATGTTGAAGGTTGCACGGCGCCCAACTAT
TCCGAAGATAGTTTGCATGCGGCGGTCGTAGAAGTTTTTGTTAAAAAAGATGGTTATTGTCGTTATACAACCATCCAAAA
CTGGTCGACCAATGTCTATAGCTTAGAAACTAAGCGTGCTCAAGCTGGGACGAACGCTACCATGGAATGGATCGATGGTA
ACTTGGGTTCTAAAGTGACGATGAAATATCCCAGCATTTACTTAGTTGGCCAAGGAGCTACGGGTTCCATGCTTTCAATT
GCGGCTGCCGGAGCCAATATGCATCAAGATACTGGCGCCAAAATGATTCATATGGCCCCGCATACGCACAGTACCATTGT
TTCTAAAGCAATTTGCCACAATGGTGGTCGAGCAGATTATCGAGGTTTGATTAAGTACACTAAAGCCGCAACCAAGGCTA
AATCGCATGTGGAATGTGACACGATTTTAATGGACCCCGATAGTGCTAGCGACACTTTCCCAGTAAATGATATTGAAACT
AGTGATGGAACGATTGAACACGAAGCCCATGTCTCTAAAATCGCAGAAGATCAATTGTATTACATGCAAAGTCGCGGTTT
GGATGAAGCAACGGCGTCCCAGTTAATTGTGATGGGCTTTCTGGAGCCCTTTACCAAGCAATTACCGATGGAATATGCGG
TGGAATTAGATCGGCTAATTAAGTTTCAAATGGAAGATAGTATTGGATAA

Upstream 100 bases:

>100_bases
ATCGCGTTTGCGACCCTCAACCAATTTCCAACGCGTGTTCGTTGTGGAATGCTAGCATGGCATGCAATGGCAGATGGATT
GAATCAAGGAGGAATCAGCT

Downstream 100 bases:

>100_bases
ATTGAAAAGAGTAATACGTAAAAAGCCCTATAATGGCGGCTTTTAGACGTATTACTCTTTTTTTATAAACAAAATTGTTG
ACTTTATGTCGTTATCGTCA

Product: Fe-S cluster assembly ABC-type transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MESENPQFEKDQLRDERGAMDPVAPVFSTGVGIDAETIKQISQAKNEPAWMLEIRLAAYQTYLDLPMPKFGPDLNGIDLD
QIKYFQRATDHIARDWEDVPNDIKATFERIGVPEAERKYLAGSAAQYESEAIYSNLKKDLESQGIIFMDTDSALQKHPDL
VRQYFGTLVPADDNKFAALNTAVWSGGTFLYVPKNVHADIPIQSYFRINAGRTGQFERTLIIVEKGGSVNYVEGCTAPNY
SEDSLHAAVVEVFVKKDGYCRYTTIQNWSTNVYSLETKRAQAGTNATMEWIDGNLGSKVTMKYPSIYLVGQGATGSMLSI
AAAGANMHQDTGAKMIHMAPHTHSTIVSKAICHNGGRADYRGLIKYTKAATKAKSHVECDTILMDPDSASDTFPVNDIET
SDGTIEHEAHVSKIAEDQLYYMQSRGLDEATASQLIVMGFLEPFTKQLPMEYAVELDRLIKFQMEDSIG

Sequences:

>Translated_469_residues
MESENPQFEKDQLRDERGAMDPVAPVFSTGVGIDAETIKQISQAKNEPAWMLEIRLAAYQTYLDLPMPKFGPDLNGIDLD
QIKYFQRATDHIARDWEDVPNDIKATFERIGVPEAERKYLAGSAAQYESEAIYSNLKKDLESQGIIFMDTDSALQKHPDL
VRQYFGTLVPADDNKFAALNTAVWSGGTFLYVPKNVHADIPIQSYFRINAGRTGQFERTLIIVEKGGSVNYVEGCTAPNY
SEDSLHAAVVEVFVKKDGYCRYTTIQNWSTNVYSLETKRAQAGTNATMEWIDGNLGSKVTMKYPSIYLVGQGATGSMLSI
AAAGANMHQDTGAKMIHMAPHTHSTIVSKAICHNGGRADYRGLIKYTKAATKAKSHVECDTILMDPDSASDTFPVNDIET
SDGTIEHEAHVSKIAEDQLYYMQSRGLDEATASQLIVMGFLEPFTKQLPMEYAVELDRLIKFQMEDSIG
>Mature_469_residues
MESENPQFEKDQLRDERGAMDPVAPVFSTGVGIDAETIKQISQAKNEPAWMLEIRLAAYQTYLDLPMPKFGPDLNGIDLD
QIKYFQRATDHIARDWEDVPNDIKATFERIGVPEAERKYLAGSAAQYESEAIYSNLKKDLESQGIIFMDTDSALQKHPDL
VRQYFGTLVPADDNKFAALNTAVWSGGTFLYVPKNVHADIPIQSYFRINAGRTGQFERTLIIVEKGGSVNYVEGCTAPNY
SEDSLHAAVVEVFVKKDGYCRYTTIQNWSTNVYSLETKRAQAGTNATMEWIDGNLGSKVTMKYPSIYLVGQGATGSMLSI
AAAGANMHQDTGAKMIHMAPHTHSTIVSKAICHNGGRADYRGLIKYTKAATKAKSHVECDTILMDPDSASDTFPVNDIET
SDGTIEHEAHVSKIAEDQLYYMQSRGLDEATASQLIVMGFLEPFTKQLPMEYAVELDRLIKFQMEDSIG

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=460, Percent_Identity=38.9130434782609, Blast_Score=344, Evalue=6e-96,
Organism=Escherichia coli, GI1787971, Length=154, Percent_Identity=29.8701298701299, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010231
- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 52083; Mature: 52083

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESENPQFEKDQLRDERGAMDPVAPVFSTGVGIDAETIKQISQAKNEPAWMLEIRLAAYQ
CCCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHH
TYLDLPMPKFGPDLNGIDLDQIKYFQRATDHIARDWEDVPNDIKATFERIGVPEAERKYL
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
AGSAAQYESEAIYSNLKKDLESQGIIFMDTDSALQKHPDLVRQYFGTLVPADDNKFAALN
CCCHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHCHHHHHHHHCCEECCCCCCEEEEE
TAVWSGGTFLYVPKNVHADIPIQSYFRINAGRTGQFERTLIIVEKGGSVNYVEGCTAPNY
EEEECCCEEEEECCCCCCCCCHHHEEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCCC
SEDSLHAAVVEVFVKKDGYCRYTTIQNWSTNVYSLETKRAQAGTNATMEWIDGNLGSKVT
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEECHHHHCCCCCEEEEECCCCCCEEE
MKYPSIYLVGQGATGSMLSIAAAGANMHQDTGAKMIHMAPHTHSTIVSKAICHNGGRADY
EECCEEEEEECCCCCCHHEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHH
RGLIKYTKAATKAKSHVECDTILMDPDSASDTFPVNDIETSDGTIEHEAHVSKIAEDQLY
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
YMQSRGLDEATASQLIVMGFLEPFTKQLPMEYAVELDRLIKFQMEDSIG
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MESENPQFEKDQLRDERGAMDPVAPVFSTGVGIDAETIKQISQAKNEPAWMLEIRLAAYQ
CCCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHH
TYLDLPMPKFGPDLNGIDLDQIKYFQRATDHIARDWEDVPNDIKATFERIGVPEAERKYL
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHH
AGSAAQYESEAIYSNLKKDLESQGIIFMDTDSALQKHPDLVRQYFGTLVPADDNKFAALN
CCCHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHCHHHHHHHHCCEECCCCCCEEEEE
TAVWSGGTFLYVPKNVHADIPIQSYFRINAGRTGQFERTLIIVEKGGSVNYVEGCTAPNY
EEEECCCEEEEECCCCCCCCCHHHEEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCCC
SEDSLHAAVVEVFVKKDGYCRYTTIQNWSTNVYSLETKRAQAGTNATMEWIDGNLGSKVT
CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEECHHHHCCCCCEEEEECCCCCCEEE
MKYPSIYLVGQGATGSMLSIAAAGANMHQDTGAKMIHMAPHTHSTIVSKAICHNGGRADY
EECCEEEEEECCCCCCHHEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHH
RGLIKYTKAATKAKSHVECDTILMDPDSASDTFPVNDIETSDGTIEHEAHVSKIAEDQLY
HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
YMQSRGLDEATASQLIVMGFLEPFTKQLPMEYAVELDRLIKFQMEDSIG
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]