| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492282
Identifier: 116492282
GI number: 116492282
Start: 534223
End: 534759
Strand: Reverse
Name: 116492282
Synonym: PEPE_0481
Alternate gene names: NA
Gene position: 534759-534223 (Counterclockwise)
Preceding gene: 116492295
Following gene: 116492274
Centisome position: 29.18
GC content: 33.33
Gene sequence:
>537_bases ATGCCAAAATCTAAAAAATTTAAACCCCTTAGAATTTTTTCTAAGTCAAACATCGTAATTGTAATTTTAGCGGCCCTTGG AATTCAGACTTATCCTAACTTAACCAACAACCAAATGGCTAAATCAGATTCCAGTGATTATACCACAGATGATACGTCTG ATAGTGCAACGGTAATTGAAAATCAAATTGCCAATAATATTAATTCGAGAATTCCTTTTCAGATCAATTTTACGGACAAT AACATTATTATTAAAGTACCTAAAATCGATATCTTTAGCTTTACCAGAAATTACGTCCCCAATACGTTAGCAGTTCTAAA AAGTATCAAAAATACCAAGTTACCGACCTCTGCTAAAAATGTTAAGTTTTTAGTGGGCGATGATGCACAAATCTTCTCCG TCAGCGCCATCAAAAAAGCTAATTTCAGTGCTAAGAAAATTAAAGAATTTGGTACTAGTGGAACGGCGTCGGAGATTACC GCTAAAACTTACCAAAACTATTATCAACAATATATCGTGCCTAAAATCCTCAAATAA
Upstream 100 bases:
>100_bases AAATGTTTGTGTATTAATACATTGTTTAATATAATTGTATAAGTAATATATTGTCTATTATTAATGCTTTATTATATAGA AAATGAAACGGAACAGGAAG
Downstream 100 bases:
>100_bases AAAGTACCGTAGAAAATTTAAATTTTTCTGCGGTACTTTTATTTATATACTTATTTTTATCTAAACATAGTCTTAGTTGC TTTTAGCAAGACTTTTGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MPKSKKFKPLRIFSKSNIVIVILAALGIQTYPNLTNNQMAKSDSSDYTTDDTSDSATVIENQIANNINSRIPFQINFTDN NIIIKVPKIDIFSFTRNYVPNTLAVLKSIKNTKLPTSAKNVKFLVGDDAQIFSVSAIKKANFSAKKIKEFGTSGTASEIT AKTYQNYYQQYIVPKILK
Sequences:
>Translated_178_residues MPKSKKFKPLRIFSKSNIVIVILAALGIQTYPNLTNNQMAKSDSSDYTTDDTSDSATVIENQIANNINSRIPFQINFTDN NIIIKVPKIDIFSFTRNYVPNTLAVLKSIKNTKLPTSAKNVKFLVGDDAQIFSVSAIKKANFSAKKIKEFGTSGTASEIT AKTYQNYYQQYIVPKILK >Mature_177_residues PKSKKFKPLRIFSKSNIVIVILAALGIQTYPNLTNNQMAKSDSSDYTTDDTSDSATVIENQIANNINSRIPFQINFTDNN IIIKVPKIDIFSFTRNYVPNTLAVLKSIKNTKLPTSAKNVKFLVGDDAQIFSVSAIKKANFSAKKIKEFGTSGTASEITA KTYQNYYQQYIVPKILK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19868; Mature: 19737
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKSKKFKPLRIFSKSNIVIVILAALGIQTYPNLTNNQMAKSDSSDYTTDDTSDSATVIE CCCCCCCCCEEEECCCCEEEEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH NQIANNINSRIPFQINFTDNNIIIKVPKIDIFSFTRNYVPNTLAVLKSIKNTKLPTSAKN HHHHHCCCCCCCEEEEEECCEEEEEECCEEEEHHHHHCCCHHHHHHHHHHCCCCCCCCCC VKFLVGDDAQIFSVSAIKKANFSAKKIKEFGTSGTASEITAKTYQNYYQQYIVPKILK EEEEECCCCEEEEEEHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PKSKKFKPLRIFSKSNIVIVILAALGIQTYPNLTNNQMAKSDSSDYTTDDTSDSATVIE CCCCCCCCEEEECCCCEEEEEEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH NQIANNINSRIPFQINFTDNNIIIKVPKIDIFSFTRNYVPNTLAVLKSIKNTKLPTSAKN HHHHHCCCCCCCEEEEEECCEEEEEECCEEEEHHHHHCCCHHHHHHHHHHCCCCCCCCCC VKFLVGDDAQIFSVSAIKKANFSAKKIKEFGTSGTASEITAKTYQNYYQQYIVPKILK EEEEECCCCEEEEEEHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA