| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492028
Identifier: 116492028
GI number: 116492028
Start: 259668
End: 260687
Strand: Reverse
Name: 116492028
Synonym: PEPE_0220
Alternate gene names: NA
Gene position: 260687-259668 (Counterclockwise)
Preceding gene: 116492029
Following gene: 116492027
Centisome position: 14.23
GC content: 36.18
Gene sequence:
>1020_bases ATGTTTATAATTGGTATTTCGATAATTATTTTTTTGATTTCCGGAACTTATTTATATTTAGATCGGCGAGATTTTATTGC GGGGATTGTTTTTGCTGGTAGTTGCATTAACTTAGCTTTATTATCCACTTTGTGGATTGCTAATTATCTGGCAGGAGGTT CAAGAACTGGAATTATTAGCCTTGCGGTCTTCCTACTTTTAGGAATTGTTTTGACGCCGTTAGTAATCGGCTTCAGTTTG ATTGTTAACACCTACATTATGCAAACTCGTGAAGGCAAAAGTTTAACTGCCAAATTATCGCTTATTTTAGGCCTTAATTT TTTATTCATGTTGGTTGCTGGTTTAGCTATTTTGTTTTTGAATCAATTTTTAGGACGCTTCGTTGGAATTTTGCTTACCC TTTTAGGGATTGATGTAACTTTAACTTTCATTTTTGTTTGTTATCTCTTTTATTCATTTCTTTATCAAGTGGTTCCGATC AAAGGCAACGTGGATTATATTATTGTTTTAGGAGCGGGGGTACGATCTGAAACCGTAACTCCACTCTTAAAAGGACGCTT GGATAAAGCCCTCGAATATTATCGAAGACAAAATGGCGCTGTGAAAATTGTGGTAAGTGGCGGACAAGGACCTGATGAAC CCGTCTCAGAAGCTTTTGCCATGGCTAAGTACTTGAGAAACCAATCCGTACCCGAAGACAAAATTATTTTAGAAGACCAA TCTACTACTACTTTCGAAAATATGCAGTTTTCCAAGCAGAAAATTGAAGCCGATTGGCAGGGAACCCAACCGCCTCAAAT TATTTTTGCTACTAATAATTACCACGTCTTACGTGGCGTAATCTATGCGCGTAAAGCTGGCTTAAATGCTAACGGTGTAG GATCACCAACTTCATTCTACTTTTTACCTAGTGCTTTAATCCGTGAATACATTGCACTATTAGTTATCTATAAAAAATTA ACTGCTTTAATTTTACTAGGTTGGATAGCCTTGGGAATTTTATTAATCTCTAAAAACTAG
Upstream 100 bases:
>100_bases CTTATAGTTTGATTGCAGGACCTTTTTATGATAATTTAGGTGAGTTATTAATGCACCTCAACACAATTATGACTAAATCA ATAACATTGGGGGCTCTGCT
Downstream 100 bases:
>100_bases GAGGTTTACTTATGCGAAAAGGAATGATTATCAGTGGCGTGGTCGTCGTAATTCTTTTAATTACTTTTGGAAGCGCCTAT TTCTGGTATAACTCTAACTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MFIIGISIIIFLISGTYLYLDRRDFIAGIVFAGSCINLALLSTLWIANYLAGGSRTGIISLAVFLLLGIVLTPLVIGFSL IVNTYIMQTREGKSLTAKLSLILGLNFLFMLVAGLAILFLNQFLGRFVGILLTLLGIDVTLTFIFVCYLFYSFLYQVVPI KGNVDYIIVLGAGVRSETVTPLLKGRLDKALEYYRRQNGAVKIVVSGGQGPDEPVSEAFAMAKYLRNQSVPEDKIILEDQ STTTFENMQFSKQKIEADWQGTQPPQIIFATNNYHVLRGVIYARKAGLNANGVGSPTSFYFLPSALIREYIALLVIYKKL TALILLGWIALGILLISKN
Sequences:
>Translated_339_residues MFIIGISIIIFLISGTYLYLDRRDFIAGIVFAGSCINLALLSTLWIANYLAGGSRTGIISLAVFLLLGIVLTPLVIGFSL IVNTYIMQTREGKSLTAKLSLILGLNFLFMLVAGLAILFLNQFLGRFVGILLTLLGIDVTLTFIFVCYLFYSFLYQVVPI KGNVDYIIVLGAGVRSETVTPLLKGRLDKALEYYRRQNGAVKIVVSGGQGPDEPVSEAFAMAKYLRNQSVPEDKIILEDQ STTTFENMQFSKQKIEADWQGTQPPQIIFATNNYHVLRGVIYARKAGLNANGVGSPTSFYFLPSALIREYIALLVIYKKL TALILLGWIALGILLISKN >Mature_339_residues MFIIGISIIIFLISGTYLYLDRRDFIAGIVFAGSCINLALLSTLWIANYLAGGSRTGIISLAVFLLLGIVLTPLVIGFSL IVNTYIMQTREGKSLTAKLSLILGLNFLFMLVAGLAILFLNQFLGRFVGILLTLLGIDVTLTFIFVCYLFYSFLYQVVPI KGNVDYIIVLGAGVRSETVTPLLKGRLDKALEYYRRQNGAVKIVVSGGQGPDEPVSEAFAMAKYLRNQSVPEDKIILEDQ STTTFENMQFSKQKIEADWQGTQPPQIIFATNNYHVLRGVIYARKAGLNANGVGSPTSFYFLPSALIREYIALLVIYKKL TALILLGWIALGILLISKN
Specific function: Unknown
COG id: COG1434
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37406; Mature: 37406
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFIIGISIIIFLISGTYLYLDRRDFIAGIVFAGSCINLALLSTLWIANYLAGGSRTGIIS CEEEHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LAVFLLLGIVLTPLVIGFSLIVNTYIMQTREGKSLTAKLSLILGLNFLFMLVAGLAILFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH NQFLGRFVGILLTLLGIDVTLTFIFVCYLFYSFLYQVVPIKGNVDYIIVLGAGVRSETVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCHHHH PLLKGRLDKALEYYRRQNGAVKIVVSGGQGPDEPVSEAFAMAKYLRNQSVPEDKIILEDQ HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECC STTTFENMQFSKQKIEADWQGTQPPQIIFATNNYHVLRGVIYARKAGLNANGVGSPTSFY CCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHH FLPSALIREYIALLVIYKKLTALILLGWIALGILLISKN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MFIIGISIIIFLISGTYLYLDRRDFIAGIVFAGSCINLALLSTLWIANYLAGGSRTGIIS CEEEHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH LAVFLLLGIVLTPLVIGFSLIVNTYIMQTREGKSLTAKLSLILGLNFLFMLVAGLAILFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH NQFLGRFVGILLTLLGIDVTLTFIFVCYLFYSFLYQVVPIKGNVDYIIVLGAGVRSETVT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCHHHH PLLKGRLDKALEYYRRQNGAVKIVVSGGQGPDEPVSEAFAMAKYLRNQSVPEDKIILEDQ HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECC STTTFENMQFSKQKIEADWQGTQPPQIIFATNNYHVLRGVIYARKAGLNANGVGSPTSFY CCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCHHH FLPSALIREYIALLVIYKKLTALILLGWIALGILLISKN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA