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The map label for this gene is xylR [C]

Identifier: 116491933

GI number: 116491933

Start: 142598

End: 143326

Strand: Reverse

Name: xylR [C]

Synonym: PEPE_0119

Alternate gene names: 116491933

Gene position: 143326-142598 (Counterclockwise)

Preceding gene: 116491934

Following gene: 116491925

Centisome position: 7.82

GC content: 36.63

Gene sequence:

>729_bases
ATGAGAATTGTTAAATTGGATCCTTCTTTATTAACATCTCAAGATCGATCATTTATTTTAAAATTTTCATTACTTGAACA
TGATCTTCTCCACTTCTTTGAAAATAAAGATTATGAACATGCCCACGAACATATTGACCAGTTTTTTAGAGACTGCGCAC
TTCAAGATTTATCTTCCGAGGTGGTGCTACAGTCTCTAATTGGTTTGGTAGGCGGCCTGACCAATATCAGTTTTTTTACC
CATCTCAATATCGCACATTTCTTAGAACTCCGGCTCGCCTTCATCAAATTTTTAAGCTCCCAAAACCTAAAAATTGAAGA
TTTTCGTGATATTTTGTTTGATATTGTTCAGACATTTTTTTCATATAACGACGAACCCACCCGCAACGTCGATTTTTCTA
AAGTGTCTAAACAGGTCGCCCTGACCGCTTACTATATCAATATGCATCGTTATGAACGCTTACGAATCGATCAGATTTTC
GCAACCTTAAACCTGGACAAAAAATACACTCTGACTCGCTTTCGCGCAGAGTTAGGCTTTTCCGTGACCCAGTATATCCG
TCACGTTAAAATGACCGAAGCAAAGAATCTGTTAATAAACACCTCAATGTCGATTGGTAAAATAGCTCAGATTCTTAAAT
TTTACGACACCGCAAATTTTTCAAGAGAATTTTTTAAAGAATATGCGGTATCACCCCGTAAATATCGTCAACTAAATCGT
TTGGTATAG

Upstream 100 bases:

>100_bases
GACAATCTTAAACTTTACAAACATATTGCTTGAATTAAGTTTAAAAATCCGACAAAATGCATTTTTGTAAGGAAGAAATT
ATCTTTAGGAAGGAGGAATT

Downstream 100 bases:

>100_bases
CGTTCATCTTCTCCCTTCCTAATTACTTCCTTATTATCCAAAAAAATCTCCACCGTCAGATTTTTATCTAACAGTGGAGA
TTTTTCGTTTTTACGATTTA

Product: AraC-type DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MRIVKLDPSLLTSQDRSFILKFSLLEHDLLHFFENKDYEHAHEHIDQFFRDCALQDLSSEVVLQSLIGLVGGLTNISFFT
HLNIAHFLELRLAFIKFLSSQNLKIEDFRDILFDIVQTFFSYNDEPTRNVDFSKVSKQVALTAYYINMHRYERLRIDQIF
ATLNLDKKYTLTRFRAELGFSVTQYIRHVKMTEAKNLLINTSMSIGKIAQILKFYDTANFSREFFKEYAVSPRKYRQLNR
LV

Sequences:

>Translated_242_residues
MRIVKLDPSLLTSQDRSFILKFSLLEHDLLHFFENKDYEHAHEHIDQFFRDCALQDLSSEVVLQSLIGLVGGLTNISFFT
HLNIAHFLELRLAFIKFLSSQNLKIEDFRDILFDIVQTFFSYNDEPTRNVDFSKVSKQVALTAYYINMHRYERLRIDQIF
ATLNLDKKYTLTRFRAELGFSVTQYIRHVKMTEAKNLLINTSMSIGKIAQILKFYDTANFSREFFKEYAVSPRKYRQLNR
LV
>Mature_242_residues
MRIVKLDPSLLTSQDRSFILKFSLLEHDLLHFFENKDYEHAHEHIDQFFRDCALQDLSSEVVLQSLIGLVGGLTNISFFT
HLNIAHFLELRLAFIKFLSSQNLKIEDFRDILFDIVQTFFSYNDEPTRNVDFSKVSKQVALTAYYINMHRYERLRIDQIF
ATLNLDKKYTLTRFRAELGFSVTQYIRHVKMTEAKNLLINTSMSIGKIAQILKFYDTANFSREFFKEYAVSPRKYRQLNR
LV

Specific function: Regulatory Protein For The Xylbafghr Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789993, Length=116, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28661; Mature: 28661

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVKLDPSLLTSQDRSFILKFSLLEHDLLHFFENKDYEHAHEHIDQFFRDCALQDLSSE
CEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
VVLQSLIGLVGGLTNISFFTHLNIAHFLELRLAFIKFLSSQNLKIEDFRDILFDIVQTFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SYNDEPTRNVDFSKVSKQVALTAYYINMHRYERLRIDQIFATLNLDKKYTLTRFRAELGF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCH
SVTQYIRHVKMTEAKNLLINTSMSIGKIAQILKFYDTANFSREFFKEYAVSPRKYRQLNR
HHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH
LV
CC
>Mature Secondary Structure
MRIVKLDPSLLTSQDRSFILKFSLLEHDLLHFFENKDYEHAHEHIDQFFRDCALQDLSSE
CEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
VVLQSLIGLVGGLTNISFFTHLNIAHFLELRLAFIKFLSSQNLKIEDFRDILFDIVQTFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SYNDEPTRNVDFSKVSKQVALTAYYINMHRYERLRIDQIFATLNLDKKYTLTRFRAELGF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCH
SVTQYIRHVKMTEAKNLLINTSMSIGKIAQILKFYDTANFSREFFKEYAVSPRKYRQLNR
HHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH
LV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA