| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is nox [H]
Identifier: 116491852
GI number: 116491852
Start: 31840
End: 33201
Strand: Reverse
Name: nox [H]
Synonym: PEPE_0034
Alternate gene names: 116491852
Gene position: 33201-31840 (Counterclockwise)
Preceding gene: 116491854
Following gene: 116491846
Centisome position: 1.81
GC content: 39.79
Gene sequence:
>1362_bases ATGACAGAAAAAATAATCGTCGTTGGTTGTACCCATGCTGGTATTGCAGCGGTCAATGAAATCTTGAAATACCACCCACA AGCGGACGTTACTGTTTTCGAACGACACGATACAATTTCATACTTATCATGCGCCACTTACTTAACATTAGGAAAAACAA TATCTAATCTTGATGAAGCGATGTATGCTGATCCCGACTACTACCGGGCTCAGGGGATAGACATGCGTCTACGCCACGAT GTGATTGATATTAATGTCGAAGAACATACCGTCTTTGCTCAAGACTTAGAGACTAAAGAATTCACTACCGAATCTTTCGA TAAGTTAATCATGGCTACTGGTTCACTCACGTCTATTCCTACTATTCAAGGCGTTGAAAATCCCAAAGTAAAGCTATGCA AGACTTATGAAGAAGCTCGTGACTTATGTGACGAAGCCCAAAATGATGAACGAATCGCTATTATTGGCGGTGGCTATATT GGTGTTGAATTAGCTGAAGGTTACAATAAATCTAACCACGAGGTTATTCTTTTCCATAAAAAAGAGACTCCACTAGACCG TCATATCGAACCTGAAATTGCTGACAAAATTACCAATCTTTTAGAAGATAAAGGCATTCAGGTCAAAACTGGTACGATTG TTAAATCCTTCGAAGATGGCGCTAACGATACCTTAATCGTAAAAACCGCCGACGAAGCGTTTGAAGTAGATATGGCTGTA ATTTGTACTGGCTTACTTCCTCAAGCTGATTTATTACAAGGTAAAGTAGATCAACTAACTAATGGAGCAATCGTCGTTAA TGATTATATGGAAACATCTAACCCTGATATCTTTGCTGCTGGAGATGCTGCTTCAGTTAAACATAATGGTTTGCAAACCG ATGTTTACATGCCATTAGCATCACAAGCCGTTCGCCAAGGGGCCTTGGCTGGTATTAATGTGTTAGATAAACGCCTCCGT TCAATTGGTACCCAATCAACAACTGGAATGCTAATCTTCGGACGCACTTTAGCTTGTAGTGGTGTGACCTTAGCCATGGC TTTGGATGCTGGAATTAACGCTACTAAAGTGGCGTATAAAGGTAGCTACCGTCCAGACTTTATGCCTAATGCTCACAAAG TTGAAATCGAATTAGTTTACGATCGTAACTCCCGTAAGGTTCTGGGAGTACAACTATGGAGCAAACATGATGTTTCTCAA GCTGCGGATACAATCTCAGCCTTAATGCATTATCACGGCACGATTGACGAATTATCCTTTATAGATATGCTATTTTCTCC AAACTTTGATCAACCTTTCAATTACTTAAATCTAGTTGGTCAATTAGCTGTTAAACAAGAAAATGGTTACTTACGAACAT AA
Upstream 100 bases:
>100_bases ATTAATCATATACTATACTATGTATAACGTTTAAGTTATAGTATACTATATAAATACTATAATTCATAATTCATACCATA AAAAAGAGGTGTCATTACAG
Downstream 100 bases:
>100_bases TAATAATAACAAATAAACTACGACAAAAGGTAATGAATCCTTCGAAGTACGAAATTCACTTCGAAAATTACCTAAAGTCG TAGTTTTTTAATATTCTACA
Product: NAD(FAD)-dependent dehydrogenase
Products: NA
Alternate protein names: NOXase [H]
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MTEKIIVVGCTHAGIAAVNEILKYHPQADVTVFERHDTISYLSCATYLTLGKTISNLDEAMYADPDYYRAQGIDMRLRHD VIDINVEEHTVFAQDLETKEFTTESFDKLIMATGSLTSIPTIQGVENPKVKLCKTYEEARDLCDEAQNDERIAIIGGGYI GVELAEGYNKSNHEVILFHKKETPLDRHIEPEIADKITNLLEDKGIQVKTGTIVKSFEDGANDTLIVKTADEAFEVDMAV ICTGLLPQADLLQGKVDQLTNGAIVVNDYMETSNPDIFAAGDAASVKHNGLQTDVYMPLASQAVRQGALAGINVLDKRLR SIGTQSTTGMLIFGRTLACSGVTLAMALDAGINATKVAYKGSYRPDFMPNAHKVEIELVYDRNSRKVLGVQLWSKHDVSQ AADTISALMHYHGTIDELSFIDMLFSPNFDQPFNYLNLVGQLAVKQENGYLRT
Sequences:
>Translated_453_residues MTEKIIVVGCTHAGIAAVNEILKYHPQADVTVFERHDTISYLSCATYLTLGKTISNLDEAMYADPDYYRAQGIDMRLRHD VIDINVEEHTVFAQDLETKEFTTESFDKLIMATGSLTSIPTIQGVENPKVKLCKTYEEARDLCDEAQNDERIAIIGGGYI GVELAEGYNKSNHEVILFHKKETPLDRHIEPEIADKITNLLEDKGIQVKTGTIVKSFEDGANDTLIVKTADEAFEVDMAV ICTGLLPQADLLQGKVDQLTNGAIVVNDYMETSNPDIFAAGDAASVKHNGLQTDVYMPLASQAVRQGALAGINVLDKRLR SIGTQSTTGMLIFGRTLACSGVTLAMALDAGINATKVAYKGSYRPDFMPNAHKVEIELVYDRNSRKVLGVQLWSKHDVSQ AADTISALMHYHGTIDELSFIDMLFSPNFDQPFNYLNLVGQLAVKQENGYLRT >Mature_452_residues TEKIIVVGCTHAGIAAVNEILKYHPQADVTVFERHDTISYLSCATYLTLGKTISNLDEAMYADPDYYRAQGIDMRLRHDV IDINVEEHTVFAQDLETKEFTTESFDKLIMATGSLTSIPTIQGVENPKVKLCKTYEEARDLCDEAQNDERIAIIGGGYIG VELAEGYNKSNHEVILFHKKETPLDRHIEPEIADKITNLLEDKGIQVKTGTIVKSFEDGANDTLIVKTADEAFEVDMAVI CTGLLPQADLLQGKVDQLTNGAIVVNDYMETSNPDIFAAGDAASVKHNGLQTDVYMPLASQAVRQGALAGINVLDKRLRS IGTQSTTGMLIFGRTLACSGVTLAMALDAGINATKVAYKGSYRPDFMPNAHKVEIELVYDRNSRKVLGVQLWSKHDVSQA ADTISALMHYHGTIDELSFIDMLFSPNFDQPFNYLNLVGQLAVKQENGYLRT
Specific function: Catalyzes the four-electron reduction of molecular oxygen to water [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI21389617, Length=348, Percent_Identity=24.7126436781609, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI65787454, Length=348, Percent_Identity=24.7126436781609, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI226437568, Length=348, Percent_Identity=24.7126436781609, Blast_Score=87, Evalue=2e-17, Organism=Escherichia coli, GI1789065, Length=208, Percent_Identity=28.3653846153846, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789765, Length=262, Percent_Identity=27.4809160305344, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1789915, Length=206, Percent_Identity=30.5825242718447, Blast_Score=65, Evalue=6e-12, Organism=Drosophila melanogaster, GI24639257, Length=345, Percent_Identity=22.6086956521739, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI281359715, Length=345, Percent_Identity=22.6086956521739, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI281359713, Length=345, Percent_Identity=22.6086956521739, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24639250, Length=345, Percent_Identity=22.6086956521739, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI18543267, Length=345, Percent_Identity=22.6086956521739, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24639252, Length=345, Percent_Identity=22.6086956521739, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24585130, Length=281, Percent_Identity=22.7758007117438, Blast_Score=73, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.6.99.3 [H]
Molecular weight: Translated: 49936; Mature: 49805
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEKIIVVGCTHAGIAAVNEILKYHPQADVTVFERHDTISYLSCATYLTLGKTISNLDEA CCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH MYADPDYYRAQGIDMRLRHDVIDINVEEHTVFAQDLETKEFTTESFDKLIMATGSLTSIP HCCCCCHHHHCCCCEEEECEEEEEECHHHEEEHHCCCCHHCCHHHHHHHHEECCCCCCCC TIQGVENPKVKLCKTYEEARDLCDEAQNDERIAIIGGGYIGVELAEGYNKSNHEVILFHK CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECCCCCCCCEEEEEEC KETPLDRHIEPEIADKITNLLEDKGIQVKTGTIVKSFEDGANDTLIVKTADEAFEVDMAV CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCEEEEEECCHHHHCCHHH ICTGLLPQADLLQGKVDQLTNGAIVVNDYMETSNPDIFAAGDAASVKHNGLQTDVYMPLA HHHCCCCCHHHHCCCHHHHCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCEEEECCHH SQAVRQGALAGINVLDKRLRSIGTQSTTGMLIFGRTLACSGVTLAMALDAGINATKVAYK HHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECEECCCCEEEEEEECCCCCEEEEEEC GSYRPDFMPNAHKVEIELVYDRNSRKVLGVQLWSKHDVSQAADTISALMHYHGTIDELSF CCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH IDMLFSPNFDQPFNYLNLVGQLAVKQENGYLRT HHHHHCCCCCCCHHHHHHHHHHEEEECCCCCCC >Mature Secondary Structure TEKIIVVGCTHAGIAAVNEILKYHPQADVTVFERHDTISYLSCATYLTLGKTISNLDEA CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH MYADPDYYRAQGIDMRLRHDVIDINVEEHTVFAQDLETKEFTTESFDKLIMATGSLTSIP HCCCCCHHHHCCCCEEEECEEEEEECHHHEEEHHCCCCHHCCHHHHHHHHEECCCCCCCC TIQGVENPKVKLCKTYEEARDLCDEAQNDERIAIIGGGYIGVELAEGYNKSNHEVILFHK CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECCCCCCCCEEEEEEC KETPLDRHIEPEIADKITNLLEDKGIQVKTGTIVKSFEDGANDTLIVKTADEAFEVDMAV CCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCEEEEEECCHHHHCCHHH ICTGLLPQADLLQGKVDQLTNGAIVVNDYMETSNPDIFAAGDAASVKHNGLQTDVYMPLA HHHCCCCCHHHHCCCHHHHCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCEEEECCHH SQAVRQGALAGINVLDKRLRSIGTQSTTGMLIFGRTLACSGVTLAMALDAGINATKVAYK HHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECEECCCCEEEEEEECCCCCEEEEEEC GSYRPDFMPNAHKVEIELVYDRNSRKVLGVQLWSKHDVSQAADTISALMHYHGTIDELSF CCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHH IDMLFSPNFDQPFNYLNLVGQLAVKQENGYLRT HHHHHCCCCCCCHHHHHHHHHHEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1404382; 12663927; 2511195; 8262333 [H]