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The map label for this gene is fliR [H]

Identifier: 116514993

GI number: 116514993

Start: 56462

End: 57262

Strand: Direct

Name: fliR [H]

Synonym: BCc_050

Alternate gene names: 116514993

Gene position: 56462-57262 (Clockwise)

Preceding gene: 116514992

Following gene: 116514998

Centisome position: 13.56

GC content: 11.36

Gene sequence:

>801_bases
ATGATAAATAATTTATTCAATAAATTTTATTTTTTAATTAATAATAATATTATTTTCATCATGGCTCGTGTTTTTTCGTT
ATTGTTTTATTTAAAAATATTTCAGAATATTAAAATTAATTATTTTACTAAAATAATAATTATTTATTTATTAAGTAGTC
TATTAATACCATTTATTTCTGTATATAAAAATAATTTTTGTACAATTGATTTTTTTTTGATTTTTTTAAATCAAATATTT
ATAGGTATTGTTTTAGGTTTTTTAATTAAAAATGTATTATTTGGTTTATTTTTTATTGGTGAAATTTTTAGTTTACAAAT
TGGTTTATCATCTTTAAATTTTTTCTATTTTGATAAAAATACTTATTCTTTAATTTTTTCAAATTTATTTAGTATTTTTT
TTTTATTTACATTTTTTATTTGTAATATGCATTTAAAATTATTGGTTCTTTTAATACACAGTTTTGAAATATATCCATTA
AATAATTTTATTTTTTATAAAAAAATTTTTTTTTATATAGTAAATTTTTTAAATATTATATTTTTTCAAAGTGTGTCTTT
TATATTACCAATTCTGTTTTTTTTTTTAATTTTATATATAACTTATATTTTTATAAATAAATTAATACCAAAAGTTTCTT
TTTTTTCTTCTTTTATGATTATTGTTTTTTTTTTTGGAATGTTTATATTAAAATATTTTTTTTATAATTTTTATCTTTTT
AATAAAATTTTAATGAATGTTTTTTTAAATTATTTTAAAAAAAATATTATAAAAAAATTTTATATTTCCTTAAAATATTA
A

Upstream 100 bases:

>100_bases
TTTTTCTTTCTCTCATTTTTTTTGGACCATGGATGTTACAGTTGACTATTCAATATATAAGAAATATTTTTTATATAATA
TCAACGGTTAATTAATCATT

Downstream 100 bases:

>100_bases
ATGAAATAAATAAAAAATTTATTTAAAAAAAAATACAATTTTTAATTAATATATATAATTATTTTTATATATTTAATTTA
TTGGAGATCTTTTATAGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MINNLFNKFYFLINNNIIFIMARVFSLLFYLKIFQNIKINYFTKIIIIYLLSSLLIPFISVYKNNFCTIDFFLIFLNQIF
IGIVLGFLIKNVLFGLFFIGEIFSLQIGLSSLNFFYFDKNTYSLIFSNLFSIFFLFTFFICNMHLKLLVLLIHSFEIYPL
NNFIFYKKIFFYIVNFLNIIFFQSVSFILPILFFFLILYITYIFINKLIPKVSFFSSFMIIVFFFGMFILKYFFYNFYLF
NKILMNVFLNYFKKNIIKKFYISLKY

Sequences:

>Translated_266_residues
MINNLFNKFYFLINNNIIFIMARVFSLLFYLKIFQNIKINYFTKIIIIYLLSSLLIPFISVYKNNFCTIDFFLIFLNQIF
IGIVLGFLIKNVLFGLFFIGEIFSLQIGLSSLNFFYFDKNTYSLIFSNLFSIFFLFTFFICNMHLKLLVLLIHSFEIYPL
NNFIFYKKIFFYIVNFLNIIFFQSVSFILPILFFFLILYITYIFINKLIPKVSFFSSFMIIVFFFGMFILKYFFYNFYLF
NKILMNVFLNYFKKNIIKKFYISLKY
>Mature_266_residues
MINNLFNKFYFLINNNIIFIMARVFSLLFYLKIFQNIKINYFTKIIIIYLLSSLLIPFISVYKNNFCTIDFFLIFLNQIF
IGIVLGFLIKNVLFGLFFIGEIFSLQIGLSSLNFFYFDKNTYSLIFSNLFSIFFLFTFFICNMHLKLLVLLIHSFEIYPL
NNFIFYKKIFFYIVNFLNIIFFQSVSFILPILFFFLILYITYIFINKLIPKVSFFSSFMIIVFFFGMFILKYFFYNFYLF
NKILMNVFLNYFKKNIIKKFYISLKY

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 32422; Mature: 32422

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]