| Definition | Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008508 |
| Length | 3,614,446 |
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The map label for this gene is sphB [H]
Identifier: 116329129
GI number: 116329129
Start: 3027029
End: 3029509
Strand: Direct
Name: sphB [H]
Synonym: LBL_2552
Alternate gene names: 116329129
Gene position: 3027029-3029509 (Clockwise)
Preceding gene: 116329128
Following gene: 116329130
Centisome position: 83.75
GC content: 42.28
Gene sequence:
>2481_bases ATGAAAACAAAGCGAAATGTCTTCCCCGAAAAAGTCAGAAAAAAATCAAAGAGACAGACAAATTCAATATTTATTATATG TTGTAGTCTCTTCTTATTTTTTACCTCACGTTGTTTACCTGATAAACAAACTTCTTATGCTGATTTACTTAAGCTTTTGC TCCTTATTTCGAATAACAGAAGCGTAAGCGACGAAAGTCAGAGTTCAACAGGTTACGATCCAATAAGCTCTGGTCCTGCA AGTCCTACCTCACCAGCAGGCCCAGGTCCAGGAGATCTCGACCCATCAAACCCTGACACAGCAAACTCAAGTTCAACAAG TTCCGGTTCAGCAAACCCTGACACAGCAAACTCAAGTTCAACAAGTTCCGGTTCAGCAAACCCTGACACAGCAAACTCAA GTTCAACAAGTTCCGGTTCAGCAAACCCTGACACAGCAAACTCAAGTTCAACAAGTTCCGGTTCAGCAAACCCTGACACA GCAAACTCAAGTTCAACAAATTCCGGTTCAGCAAACCCTGACACAGCAAACTCAAGTTCAACAAGTTCCGGTTCAGCAAA CCCTGACACAGCAAACTCAAGTTCAACAAATTCCGGTTCAGCAAACCCTGACACAGCAAACTCAAGTTCAACAAGTTCCG GTTCAGCAAACCCTGACACAGCAAACTCAAGTTCAACAAATTCCGGTTCAGCAAACCCTGACACAGCAAACTCAAGTTCA ACAAGTTCCGGTTCAGCAAACCCTGACACAGCAAACTCAAGTTCAACAAATTCCGGTTCAGCAAACCCTGACACAGCAAA CTCAAGTTCAACAAGTTCCGGTTCAGCAAACTCAAGTTCAAAAGCACCTCCAGGCCGACCAGCAAGTATCGGTATAGGAA GTTCTAGCATAGTAATAACCTACATTCCACCAAACACTGGCACAACAAATTCCCGTCCATCGCCAGCAAGTACCGGTATA GGAAGTATTACTAGCATAGTAGAAACAATAGGCTCTGTTTCAGTTCCATCAGGCTCCAGCAGGGTACACTTCAATTCACA AAACTTGGAAATCAAAATTTTAAGTCATAACGTTTCTTTAATGTCGACTCAACTTCCAGCTTGGGCAGATTGGGGACAAA AAGAAAGAGCAGAACAAATCGCAAACTCGGACTACATAAAACATCAAGACATCATAGTATTTGAAGGTCTTTCCGACGCT AACGCGAGAAAAATTCTCTTAGACGGAATTCGTTCACAATATCCGTATCAAACCGAAGCAGTAGGAAGCACCAGAAACGG TTGGAATGCCACTTTAGGAGTTTACAGGCAATCTACGTCTGCAGACGGAGGAGTTGTAATCGTAAGCCAATGGCCCATTG AAGAAAAGGTACAATACATCTTCGACAATCCTGGATGTGGCGTTGAATCGTCTTATCACAAAGGATTCAATTACGTAAGA ATCAACAAAAATGGAAAAAAATTCCATGTTATAGGAACCCAAGTTCAAATGGTAGGCCCGGCATGCTCGGATTTAGGAAG ATCCGTAAGAATGAATCAATTCAACAATATCAAAGATTTCATCGACACAAAAGCAATCCCAAGGGACGAACTCGTTTTAA TAGCGGGAGATCTGAACGTAACCAGAGGTAGTGACGAATATTATGGAATGCTTACTAGTCTAAACGTAAGCGAGCCTAAA TATGCGGGAATTCCTTATACACAGGACCCGCAAGTTAACGCCCTTACCGCTTTGAGGCATAGAGATTCACAACCTACATA TACGAATTATGTACTCGTTTCAAAATCCCACAGCCAACCTGAGGTTTGGCAAAATTTGGCTTACGATCCGATTTCTCCAA AAATCTGGAAAAGATCGAACGGACACATAAGTTATGAATTTTCCGACTCCTATCCAGTTTACGGTTTTGTATATGCAGAT GACACAACTCCTACAAAATCCGGGCATAGAAGAAAGTACGATCAAGTTTCCTTAGTATCCGTAGCCACCGGAAAAAGGAT TCAAGCCAATTCTCGAAAAAAGAACGGATGGTTAAAAGCGAACGCAACCACTGAAACAAAATTCACACAATTCAATTTAG TGCAACCATCGGATCCCAACTCAAACCCGTTCTGCATGGAAAGCGGATACGTTCGAGTCGAACCCTCCGCTTATTTGAAT TATTTTTGGAATTGGTGGTATTCCGGGGGATTTTCAGGAGGAAACGGCAATTACGGCTACTATCCTAAATTCGACGACGG CTCCAATCGACTCCAAATCATAAACCTGGACGGAGGATGTATGCAAGACGGAAGTCGAATCACATTCAAAGATTATAATA CTGTCTTAGCAAAACATCAATACCTCACGATTTGGAGAAAGGGAGCCTGGAGCCAATATTTATTTCTTTGGAGTAATGGT GTTGTCAGGGAGACGACATTCTATCTACGATTGAATTCCACTCCGGTGAGAGATTGGCGTTCGGATTTAATTTATCGTTA A
Upstream 100 bases:
>100_bases ACAAGAATTACGCCCTTGAAACATTTTTTTATAAAATATTATTATTCTTTTTCAGGTCGTGTATAATAAGGACGTTCATA AAAAGGAATGGAGATAAATT
Downstream 100 bases:
>100_bases AAAATTTCCGAATCAATCAAGAGGCGTGTATATTTGCACGCCTCTTCGAACATCGCCGGAAATTTTAAAGTCCGTTCCAA AATCTTGGGATAAAATAGCT
Product: sphingomyelinase B
Products: NA
Alternate protein names: Sphingomyelin phosphodiesterase; SMase [H]
Number of amino acids: Translated: 826; Mature: 826
Protein sequence:
>826_residues MKTKRNVFPEKVRKKSKRQTNSIFIICCSLFLFFTSRCLPDKQTSYADLLKLLLLISNNRSVSDESQSSTGYDPISSGPA SPTSPAGPGPGDLDPSNPDTANSSSTSSGSANPDTANSSSTSSGSANPDTANSSSTSSGSANPDTANSSSTSSGSANPDT ANSSSTNSGSANPDTANSSSTSSGSANPDTANSSSTNSGSANPDTANSSSTSSGSANPDTANSSSTNSGSANPDTANSSS TSSGSANPDTANSSSTNSGSANPDTANSSSTSSGSANSSSKAPPGRPASIGIGSSSIVITYIPPNTGTTNSRPSPASTGI GSITSIVETIGSVSVPSGSSRVHFNSQNLEIKILSHNVSLMSTQLPAWADWGQKERAEQIANSDYIKHQDIIVFEGLSDA NARKILLDGIRSQYPYQTEAVGSTRNGWNATLGVYRQSTSADGGVVIVSQWPIEEKVQYIFDNPGCGVESSYHKGFNYVR INKNGKKFHVIGTQVQMVGPACSDLGRSVRMNQFNNIKDFIDTKAIPRDELVLIAGDLNVTRGSDEYYGMLTSLNVSEPK YAGIPYTQDPQVNALTALRHRDSQPTYTNYVLVSKSHSQPEVWQNLAYDPISPKIWKRSNGHISYEFSDSYPVYGFVYAD DTTPTKSGHRRKYDQVSLVSVATGKRIQANSRKKNGWLKANATTETKFTQFNLVQPSDPNSNPFCMESGYVRVEPSAYLN YFWNWWYSGGFSGGNGNYGYYPKFDDGSNRLQIINLDGGCMQDGSRITFKDYNTVLAKHQYLTIWRKGAWSQYLFLWSNG VVRETTFYLRLNSTPVRDWRSDLIYR
Sequences:
>Translated_826_residues MKTKRNVFPEKVRKKSKRQTNSIFIICCSLFLFFTSRCLPDKQTSYADLLKLLLLISNNRSVSDESQSSTGYDPISSGPA SPTSPAGPGPGDLDPSNPDTANSSSTSSGSANPDTANSSSTSSGSANPDTANSSSTSSGSANPDTANSSSTSSGSANPDT ANSSSTNSGSANPDTANSSSTSSGSANPDTANSSSTNSGSANPDTANSSSTSSGSANPDTANSSSTNSGSANPDTANSSS TSSGSANPDTANSSSTNSGSANPDTANSSSTSSGSANSSSKAPPGRPASIGIGSSSIVITYIPPNTGTTNSRPSPASTGI GSITSIVETIGSVSVPSGSSRVHFNSQNLEIKILSHNVSLMSTQLPAWADWGQKERAEQIANSDYIKHQDIIVFEGLSDA NARKILLDGIRSQYPYQTEAVGSTRNGWNATLGVYRQSTSADGGVVIVSQWPIEEKVQYIFDNPGCGVESSYHKGFNYVR INKNGKKFHVIGTQVQMVGPACSDLGRSVRMNQFNNIKDFIDTKAIPRDELVLIAGDLNVTRGSDEYYGMLTSLNVSEPK YAGIPYTQDPQVNALTALRHRDSQPTYTNYVLVSKSHSQPEVWQNLAYDPISPKIWKRSNGHISYEFSDSYPVYGFVYAD DTTPTKSGHRRKYDQVSLVSVATGKRIQANSRKKNGWLKANATTETKFTQFNLVQPSDPNSNPFCMESGYVRVEPSAYLN YFWNWWYSGGFSGGNGNYGYYPKFDDGSNRLQIINLDGGCMQDGSRITFKDYNTVLAKHQYLTIWRKGAWSQYLFLWSNG VVRETTFYLRLNSTPVRDWRSDLIYR >Mature_826_residues MKTKRNVFPEKVRKKSKRQTNSIFIICCSLFLFFTSRCLPDKQTSYADLLKLLLLISNNRSVSDESQSSTGYDPISSGPA SPTSPAGPGPGDLDPSNPDTANSSSTSSGSANPDTANSSSTSSGSANPDTANSSSTSSGSANPDTANSSSTSSGSANPDT ANSSSTNSGSANPDTANSSSTSSGSANPDTANSSSTNSGSANPDTANSSSTSSGSANPDTANSSSTNSGSANPDTANSSS TSSGSANPDTANSSSTNSGSANPDTANSSSTSSGSANSSSKAPPGRPASIGIGSSSIVITYIPPNTGTTNSRPSPASTGI GSITSIVETIGSVSVPSGSSRVHFNSQNLEIKILSHNVSLMSTQLPAWADWGQKERAEQIANSDYIKHQDIIVFEGLSDA NARKILLDGIRSQYPYQTEAVGSTRNGWNATLGVYRQSTSADGGVVIVSQWPIEEKVQYIFDNPGCGVESSYHKGFNYVR INKNGKKFHVIGTQVQMVGPACSDLGRSVRMNQFNNIKDFIDTKAIPRDELVLIAGDLNVTRGSDEYYGMLTSLNVSEPK YAGIPYTQDPQVNALTALRHRDSQPTYTNYVLVSKSHSQPEVWQNLAYDPISPKIWKRSNGHISYEFSDSYPVYGFVYAD DTTPTKSGHRRKYDQVSLVSVATGKRIQANSRKKNGWLKANATTETKFTQFNLVQPSDPNSNPFCMESGYVRVEPSAYLN YFWNWWYSGGFSGGNGNYGYYPKFDDGSNRLQIINLDGGCMQDGSRITFKDYNTVLAKHQYLTIWRKGAWSQYLFLWSNG VVRETTFYLRLNSTPVRDWRSDLIYR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005135 - InterPro: IPR017766 [H]
Pfam domain/function: PF03372 Exo_endo_phos [H]
EC number: =3.1.4.12 [H]
Molecular weight: Translated: 88531; Mature: 88531
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTKRNVFPEKVRKKSKRQTNSIFIICCSLFLFFTSRCLPDKQTSYADLLKLLLLISNNR CCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC SVSDESQSSTGYDPISSGPASPTSPAGPGPGDLDPSNPDTANSSSTSSGSANPDTANSSS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSSGSANPDTANSSSTSSGSANPDTANSSSTSSGSANPDTANSSSTNSGSANPDTANSSS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSSGSANPDTANSSSTNSGSANPDTANSSSTSSGSANPDTANSSSTNSGSANPDTANSSS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSSGSANPDTANSSSTNSGSANPDTANSSSTSSGSANSSSKAPPGRPASIGIGSSSIVIT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEE YIPPNTGTTNSRPSPASTGIGSITSIVETIGSVSVPSGSSRVHFNSQNLEIKILSHNVSL EECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEECCCEE MSTQLPAWADWGQKERAEQIANSDYIKHQDIIVFEGLSDANARKILLDGIRSQYPYQTEA EEECCCCHHCCCHHHHHHHHHCCCCEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCHHH VGSTRNGWNATLGVYRQSTSADGGVVIVSQWPIEEKVQYIFDNPGCGVESSYHKGFNYVR CCCCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHEEECCCCCCCCCHHHCCCCEEE INKNGKKFHVIGTQVQMVGPACSDLGRSVRMNQFNNIKDFIDTKAIPRDELVLIAGDLNV ECCCCCEEEEEECEEEECCCHHHHHCCCEEHHHHCCHHHHHHHCCCCCCCEEEEECCCEE TRGSDEYYGMLTSLNVSEPKYAGIPYTQDPQVNALTALRHRDSQPTYTNYVLVSKSHSQP ECCCCHHEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCH EVWQNLAYDPISPKIWKRSNGHISYEFSDSYPVYGFVYADDTTPTKSGHRRKYDQVSLVS HHHHHCCCCCCCHHHEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEE VATGKRIQANSRKKNGWLKANATTETKFTQFNLVQPSDPNSNPFCMESGYVRVEPSAYLN ECCCCEEECCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCEEEECCEEEECCHHHEE YFWNWWYSGGFSGGNGNYGYYPKFDDGSNRLQIINLDGGCMQDGSRITFKDYNTVLAKHQ HEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHCCE YLTIWRKGAWSQYLFLWSNGVVRETTFYLRLNSTPVRDWRSDLIYR EEEEEECCCCCEEEEEECCCEEEEEEEEEEECCCCCHHHHHHHCCC >Mature Secondary Structure MKTKRNVFPEKVRKKSKRQTNSIFIICCSLFLFFTSRCLPDKQTSYADLLKLLLLISNNR CCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC SVSDESQSSTGYDPISSGPASPTSPAGPGPGDLDPSNPDTANSSSTSSGSANPDTANSSS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSSGSANPDTANSSSTSSGSANPDTANSSSTSSGSANPDTANSSSTNSGSANPDTANSSS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSSGSANPDTANSSSTNSGSANPDTANSSSTSSGSANPDTANSSSTNSGSANPDTANSSS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TSSGSANPDTANSSSTNSGSANPDTANSSSTSSGSANSSSKAPPGRPASIGIGSSSIVIT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEE YIPPNTGTTNSRPSPASTGIGSITSIVETIGSVSVPSGSSRVHFNSQNLEIKILSHNVSL EECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEECCCEE MSTQLPAWADWGQKERAEQIANSDYIKHQDIIVFEGLSDANARKILLDGIRSQYPYQTEA EEECCCCHHCCCHHHHHHHHHCCCCEECCCEEEEECCCCCCCHHHHHHHHHHCCCCCHHH VGSTRNGWNATLGVYRQSTSADGGVVIVSQWPIEEKVQYIFDNPGCGVESSYHKGFNYVR CCCCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHEEECCCCCCCCCHHHCCCCEEE INKNGKKFHVIGTQVQMVGPACSDLGRSVRMNQFNNIKDFIDTKAIPRDELVLIAGDLNV ECCCCCEEEEEECEEEECCCHHHHHCCCEEHHHHCCHHHHHHHCCCCCCCEEEEECCCEE TRGSDEYYGMLTSLNVSEPKYAGIPYTQDPQVNALTALRHRDSQPTYTNYVLVSKSHSQP ECCCCHHEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCH EVWQNLAYDPISPKIWKRSNGHISYEFSDSYPVYGFVYADDTTPTKSGHRRKYDQVSLVS HHHHHCCCCCCCHHHEECCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEE VATGKRIQANSRKKNGWLKANATTETKFTQFNLVQPSDPNSNPFCMESGYVRVEPSAYLN ECCCCEEECCCCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCEEEECCEEEECCHHHEE YFWNWWYSGGFSGGNGNYGYYPKFDDGSNRLQIINLDGGCMQDGSRITFKDYNTVLAKHQ HEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEECHHHHHHCCE YLTIWRKGAWSQYLFLWSNGVVRETTFYLRLNSTPVRDWRSDLIYR EEEEEECCCCCEEEEEECCCEEEEEEEEEEECCCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2163985 [H]