Click here to switch to the map view.

The map label for this gene is czcB [H]

Identifier: 116328755

GI number: 116328755

Start: 2492990

End: 2494168

Strand: Reverse

Name: czcB [H]

Synonym: LBL_2129

Alternate gene names: 116328755

Gene position: 2494168-2492990 (Counterclockwise)

Preceding gene: 116328756

Following gene: 116328754

Centisome position: 69.01

GC content: 45.04

Gene sequence:

>1179_bases
ATGTTCATAAGACGATACAAGATTATTCTCGTTCTTCTCGCGGCTTTAAGCGCCGGATATTTCGGATACAAAAAATTCTT
CTTTAAAAAACAGGAAGAGAAAAAACAAGCCGTCGTAGATAAGAACAGATTTACCGTATCCGAAGAGATATTAAAAAGAC
ATCCCTTGACGTTCGTCTCTCTGAGAGAGATTTCAGCGGTCGACGAAATCGCTCTTCCCGGAAGGATTTCCTACGATCCC
GAAAGTATGGCAAGAGCCGGTTCGACGGTCGAAGGGAGAATCAAAAAGGTTCTCGTGAGAGAAGGAGATCGAGTGAGTCA
GGGTTCTCCGCTTGCGATTCTTTCTTCCGTGGTGCTCGGAGAAGTAGAAGCTTCTTACGTGAAAGCAAGGGCTAGCCTCG
AAGCGTTAAAGTTACAAGCCGATCGTGCGAAAGAACTTTTCGATATGAAGGTAACTTCCGCAAAAGATTACGAGTTTGCG
AATATGCAATACAAAACGGCAAAAATCGAAGTGGAGACGATTCGGATTAAACTTGAAAACTACGGGCTTACTCCTGCGGA
AATCGCGGGAATTGAAAGAGGGGTTTACGTTTCTTCCAATCTCGTTTTGAGAAGTTCGATCAACGGAGAGGTTACCGAAA
GAAAAGCGGTTCAAGGTCAACAGGTCACAAGAAACGAGGATTTGTTCACCATTGCCAATCTTACCAATTTGATGGTTCTT
TTGGAAGTGTATGAAAAAGATCTAGGCACAATCTCCGAAGGAGCCGAGGCGCATATCTATCCTCTGGGGGATAAGGAATC
TCCCGGCATCCGTGGCGAAGTTGCATACGTAGGAACCGTTTTAGACAACGTAAAAAGAACCGCGAAATTAAGAATCATGG
TTTCCAATCGGAACGGAAAATTAAAACCGGGCCAATCCGTAACCGCAAAGGTAAAGGGAATCGTCGCCGATACGGGAGCG
GAACCTAAACGTACTGTTCCTCTGGAAGCCGTTCATGAAATCGAAGGAAAATCCATCGTGTTTCTTCAGAACGATGACGG
AAGTTTTGAAGCTGTCGAAGTGATCACGGGGGATACCGTGGGAGACGAGGTTGTCATCAAAGTCGGTCTCAAAGAGGAGG
GAGCACGGATCGTTTCGAAGGGATCCTTTATTCTCAAAAGTGAATATTTGAAATTGTAG

Upstream 100 bases:

>100_bases
ATTACGAAGTGTTGTATCTCTATTACAACGCGGTTGAAATATATAAGGCGGCGGTAGGAAAAAAAACGGAGAGGTAATAA
ATCCTATCTCGGAGATTCGT

Downstream 100 bases:

>100_bases
GTATTCAAAAAATTTGAAATAAAATCCGGACTTTTGTCCTCATATCTTATGCGTACATTTGCATTCTTACAAGACTCGAA
CAGATCCGCCGCTTACAATC

Product: efflux pump

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MFIRRYKIILVLLAALSAGYFGYKKFFFKKQEEKKQAVVDKNRFTVSEEILKRHPLTFVSLREISAVDEIALPGRISYDP
ESMARAGSTVEGRIKKVLVREGDRVSQGSPLAILSSVVLGEVEASYVKARASLEALKLQADRAKELFDMKVTSAKDYEFA
NMQYKTAKIEVETIRIKLENYGLTPAEIAGIERGVYVSSNLVLRSSINGEVTERKAVQGQQVTRNEDLFTIANLTNLMVL
LEVYEKDLGTISEGAEAHIYPLGDKESPGIRGEVAYVGTVLDNVKRTAKLRIMVSNRNGKLKPGQSVTAKVKGIVADTGA
EPKRTVPLEAVHEIEGKSIVFLQNDDGSFEAVEVITGDTVGDEVVIKVGLKEEGARIVSKGSFILKSEYLKL

Sequences:

>Translated_392_residues
MFIRRYKIILVLLAALSAGYFGYKKFFFKKQEEKKQAVVDKNRFTVSEEILKRHPLTFVSLREISAVDEIALPGRISYDP
ESMARAGSTVEGRIKKVLVREGDRVSQGSPLAILSSVVLGEVEASYVKARASLEALKLQADRAKELFDMKVTSAKDYEFA
NMQYKTAKIEVETIRIKLENYGLTPAEIAGIERGVYVSSNLVLRSSINGEVTERKAVQGQQVTRNEDLFTIANLTNLMVL
LEVYEKDLGTISEGAEAHIYPLGDKESPGIRGEVAYVGTVLDNVKRTAKLRIMVSNRNGKLKPGQSVTAKVKGIVADTGA
EPKRTVPLEAVHEIEGKSIVFLQNDDGSFEAVEVITGDTVGDEVVIKVGLKEEGARIVSKGSFILKSEYLKL
>Mature_392_residues
MFIRRYKIILVLLAALSAGYFGYKKFFFKKQEEKKQAVVDKNRFTVSEEILKRHPLTFVSLREISAVDEIALPGRISYDP
ESMARAGSTVEGRIKKVLVREGDRVSQGSPLAILSSVVLGEVEASYVKARASLEALKLQADRAKELFDMKVTSAKDYEFA
NMQYKTAKIEVETIRIKLENYGLTPAEIAGIERGVYVSSNLVLRSSINGEVTERKAVQGQQVTRNEDLFTIANLTNLMVL
LEVYEKDLGTISEGAEAHIYPLGDKESPGIRGEVAYVGTVLDNVKRTAKLRIMVSNRNGKLKPGQSVTAKVKGIVADTGA
EPKRTVPLEAVHEIEGKSIVFLQNDDGSFEAVEVITGDTVGDEVVIKVGLKEEGARIVSKGSFILKSEYLKL

Specific function: CzcA and CzcB together would act in zinc efflux nearly as effectively as the complete czc efflux system (CzcABC). The CzcB protein is thought to funnel zinc cations to the CzcA transport protein [H]

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Attached To The Inner Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005695
- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 43250; Mature: 43250

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIRRYKIILVLLAALSAGYFGYKKFFFKKQEEKKQAVVDKNRFTVSEEILKRHPLTFVS
CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEEE
LREISAVDEIALPGRISYDPESMARAGSTVEGRIKKVLVREGDRVSQGSPLAILSSVVLG
HHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
EVEASYVKARASLEALKLQADRAKELFDMKVTSAKDYEFANMQYKTAKIEVETIRIKLEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEECCEEEEEEEEEEEEEEEEEEC
YGLTPAEIAGIERGVYVSSNLVLRSSINGEVTERKAVQGQQVTRNEDLFTIANLTNLMVL
CCCCHHHHHCCCCCEEEECCEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEHHHHHHHHH
LEVYEKDLGTISEGAEAHIYPLGDKESPGIRGEVAYVGTVLDNVKRTAKLRIMVSNRNGK
HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEHEEHHHHHHHHHCEEEEEEEEECCCCC
LKPGQSVTAKVKGIVADTGAEPKRTVPLEAVHEIEGKSIVFLQNDDGSFEAVEVITGDTV
CCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCC
GDEVVIKVGLKEEGARIVSKGSFILKSEYLKL
CCEEEEEECCCCCCCEEEECCCEEEECCHHCC
>Mature Secondary Structure
MFIRRYKIILVLLAALSAGYFGYKKFFFKKQEEKKQAVVDKNRFTVSEEILKRHPLTFVS
CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHCCCEEEE
LREISAVDEIALPGRISYDPESMARAGSTVEGRIKKVLVREGDRVSQGSPLAILSSVVLG
HHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
EVEASYVKARASLEALKLQADRAKELFDMKVTSAKDYEFANMQYKTAKIEVETIRIKLEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEECCEEEEEEEEEEEEEEEEEEC
YGLTPAEIAGIERGVYVSSNLVLRSSINGEVTERKAVQGQQVTRNEDLFTIANLTNLMVL
CCCCHHHHHCCCCCEEEECCEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEHHHHHHHHH
LEVYEKDLGTISEGAEAHIYPLGDKESPGIRGEVAYVGTVLDNVKRTAKLRIMVSNRNGK
HHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEHEEHHHHHHHHHCEEEEEEEEECCCCC
LKPGQSVTAKVKGIVADTGAEPKRTVPLEAVHEIEGKSIVFLQNDDGSFEAVEVITGDTV
CCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCEEEEEEEECCCC
GDEVVIKVGLKEEGARIVSKGSFILKSEYLKL
CCEEEEEECCCCCCCEEEECCCEEEECCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8829543 [H]