Click here to switch to the map view.

The map label for this gene is recA [H]

Identifier: 116328242

GI number: 116328242

Start: 1833127

End: 1834230

Strand: Reverse

Name: recA [H]

Synonym: LBL_1569

Alternate gene names: 116328242

Gene position: 1834230-1833127 (Counterclockwise)

Preceding gene: 116328243

Following gene: 116328241

Centisome position: 50.75

GC content: 41.94

Gene sequence:

>1104_bases
ATGGGAGAAGGTATTATGAAGAAAAGTAAAGAAGAAGCTCAAAATGTAGATGATTCTAAAAAGTTAGCGATCGAACAAGC
GATGAACCAAATTGAAAAACAATTTGGAAAAGGTTCAATTATGAAATTGGGTTCGGATACTTCCAAACAAACCGTTCAGG
TGATTCCTTCCGGTTCTTTAGATTTGGACATTGCACTTGGAATCGGAGGTTATCCGATTGGAAGAATTGTGGAAATCTAC
GGACCTGAATCTTCCGGAAAAACGACCCTTACTCTTTCAGCAATCGCGGAAGCTCAAAAGAGGGGCGGGGTTGCAGCATT
CATCGATGCGGAACATGCGTTGGATCCCTCCTACGCAAAAAAACTCGGAGTCAATATTGATGAACTTTTAGTTTCTCAAC
CGGACAATGGAGAAGAAGCCCTGGAAATCTGCGAATCCTTAGTGCGAAGCAATGCAATTGATTTGATTGTAATCGACTCC
GTAGCGGCGCTTGTTCCGAAAGCTGAAATTGAAGGGGATATGGGAGATTCACACATGGGTTTACAAGCAAGACTCATGTC
CCAGGCTCTTAGAAAACTCACAGGAACGATTGCGAAATCTAAAACCGTGGTCGTATTTATCAATCAAATTCGGATGAAAA
TCGGAGTCATGTTCGGCTCTCCGGAAACAACCACAGGCGGAAACGCTCTAAAATTTTACTGTTCGATTCGTTTGGACATT
CGAAAAATCGAAACGATCAAAGAAAAAGAAGAATCGGTTGGGAACAGAGTTCGGGTCAAAGTAGTCAAAAATAAATGTGC
CCCTCCATTTAAACAGGCAGAGTTTGATATAATCTTCAACGCAGGCATCAGTAGAGAGGGTTCTCTGGTTGACCTTGGTG
TAAAGCATGATATCATTCACAAAGCTGGGGCATGGTATTCCTATAATACGGAAAAAATCGGACAGGGAAAAGAAGCCGCC
AAGGAGTATCTGAAAAACAATCCCGAAATTGCTTTAACCATTGAAAATATGATCAGAGATTTAAATAGCCTGCCCTTGCA
GGCTCAGGAAAACAAAAAGCCACGCAAAGAGAAAGAGGAAAAATTAGAACAGGCCGTTGGCTAA

Upstream 100 bases:

>100_bases
ACATCTTTTTGTCCGGATCAGAAGCCATACTTAAAAAAGATAACCGTTATTTTGACGGTGTGTTTCCTCTCAGAACCGCA
TAAGGGGAGGAGGCAAAAAC

Downstream 100 bases:

>100_bases
AATAAATGGCTTTCTTTTTAGGAACCCTTGACCGCCGAATGAGAAATCGTTCGGCGTTTTTTTTAATTACGGTATTTTCC
AAAAATTAAAATCTTTCTAT

Product: recombinase A

Products: NA

Alternate protein names: Recombinase A [H]

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MGEGIMKKSKEEAQNVDDSKKLAIEQAMNQIEKQFGKGSIMKLGSDTSKQTVQVIPSGSLDLDIALGIGGYPIGRIVEIY
GPESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAKKLGVNIDELLVSQPDNGEEALEICESLVRSNAIDLIVIDS
VAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGTIAKSKTVVVFINQIRMKIGVMFGSPETTTGGNALKFYCSIRLDI
RKIETIKEKEESVGNRVRVKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIHKAGAWYSYNTEKIGQGKEAA
KEYLKNNPEIALTIENMIRDLNSLPLQAQENKKPRKEKEEKLEQAVG

Sequences:

>Translated_367_residues
MGEGIMKKSKEEAQNVDDSKKLAIEQAMNQIEKQFGKGSIMKLGSDTSKQTVQVIPSGSLDLDIALGIGGYPIGRIVEIY
GPESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAKKLGVNIDELLVSQPDNGEEALEICESLVRSNAIDLIVIDS
VAALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGTIAKSKTVVVFINQIRMKIGVMFGSPETTTGGNALKFYCSIRLDI
RKIETIKEKEESVGNRVRVKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIHKAGAWYSYNTEKIGQGKEAA
KEYLKNNPEIALTIENMIRDLNSLPLQAQENKKPRKEKEEKLEQAVG
>Mature_366_residues
GEGIMKKSKEEAQNVDDSKKLAIEQAMNQIEKQFGKGSIMKLGSDTSKQTVQVIPSGSLDLDIALGIGGYPIGRIVEIYG
PESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAKKLGVNIDELLVSQPDNGEEALEICESLVRSNAIDLIVIDSV
AALVPKAEIEGDMGDSHMGLQARLMSQALRKLTGTIAKSKTVVVFINQIRMKIGVMFGSPETTTGGNALKFYCSIRLDIR
KIETIKEKEESVGNRVRVKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIHKAGAWYSYNTEKIGQGKEAAK
EYLKNNPEIALTIENMIRDLNSLPLQAQENKKPRKEKEEKLEQAVG

Specific function: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family [H]

Homologues:

Organism=Escherichia coli, GI1789051, Length=335, Percent_Identity=67.1641791044776, Blast_Score=457, Evalue=1e-130,

Paralogues:

None

Copy number: 1548 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800-1200 (L-broth) 40,000-60,000 (L-broth + Nalidixate) 4,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013765
- InterPro:   IPR020588
- InterPro:   IPR020587 [H]

Pfam domain/function: PF00154 RecA [H]

EC number: NA

Molecular weight: Translated: 39985; Mature: 39853

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: PS50162 RECA_2 ; PS50163 RECA_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEGIMKKSKEEAQNVDDSKKLAIEQAMNQIEKQFGKGSIMKLGSDTSKQTVQVIPSGSL
CCCCCHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCC
DLDIALGIGGYPIGRIVEIYGPESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAK
CEEEEECCCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHCCEEEEEECHHCCCHHHHH
KLGVNIDELLVSQPDNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMG
HHCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHCCHHHCCCCCCCCCCH
LQARLMSQALRKLTGTIAKSKTVVVFINQIRMKIGVMFGSPETTTGGNALKFYCSIRLDI
HHHHHHHHHHHHHHHHHHCCCEEEEEHHHHEEEEEEEECCCCCCCCCCEEEEEEEEEEEH
RKIETIKEKEESVGNRVRVKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIH
HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHH
KAGAWYSYNTEKIGQGKEAAKEYLKNNPEIALTIENMIRDLNSLPLQAQENKKPRKEKEE
HCCCEEECCHHHHCCCHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHH
KLEQAVG
HHHHHCC
>Mature Secondary Structure 
GEGIMKKSKEEAQNVDDSKKLAIEQAMNQIEKQFGKGSIMKLGSDTSKQTVQVIPSGSL
CCCCHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEECCCCC
DLDIALGIGGYPIGRIVEIYGPESSGKTTLTLSAIAEAQKRGGVAAFIDAEHALDPSYAK
CEEEEECCCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHCCEEEEEECHHCCCHHHHH
KLGVNIDELLVSQPDNGEEALEICESLVRSNAIDLIVIDSVAALVPKAEIEGDMGDSHMG
HHCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHCCHHHCCCCCCCCCCH
LQARLMSQALRKLTGTIAKSKTVVVFINQIRMKIGVMFGSPETTTGGNALKFYCSIRLDI
HHHHHHHHHHHHHHHHHHCCCEEEEEHHHHEEEEEEEECCCCCCCCCCEEEEEEEEEEEH
RKIETIKEKEESVGNRVRVKVVKNKCAPPFKQAEFDIIFNAGISREGSLVDLGVKHDIIH
HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHHH
KAGAWYSYNTEKIGQGKEAAKEYLKNNPEIALTIENMIRDLNSLPLQAQENKKPRKEKEE
HCCCEEECCHHHHCCCHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHH
KLEQAVG
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA