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The map label for this gene is ybbK [C]

Identifier: 116328053

GI number: 116328053

Start: 1582039

End: 1582971

Strand: Reverse

Name: ybbK [C]

Synonym: LBL_1348

Alternate gene names: 116328053

Gene position: 1582971-1582039 (Counterclockwise)

Preceding gene: 116328054

Following gene: 116328052

Centisome position: 43.8

GC content: 41.8

Gene sequence:

>933_bases
ATGGAAACGTTTCAAAACACATTCGTAATGATATTCTGGACTCTGTTCGGAATCTACTTCGCATACAAACTCTATCGTTC
GATCCGAATCGTTTCCGCTCAGGATTGTATCGTAGTGGAAAGACTCGGAAAATACAGTAGAACCTTACACGCAGGTCTTC
ATCTTCTTTGGCCTTTCCTTGAAAAGGATGCATACTATCATACGTTGAAAGAACAAGCCACGGACGTTCCTCCTCAGACT
TGTATTACAAAAGACAACGTGAAAGTGGAGATGGATGGAATTCTTTATCTTAAAGTCCTGGATCCATACAAAGCGAGTTA
TGGAATCAACGACTATCAATTTGCGGCTTCTCAACTCGCCCAAACTACGATGCGCGCCATCATAGGAACGATGGATTTGG
ATGTTACGTTTGAGACCAGAGACGCGATCAACAGTAAGATTCTGGAAGTTTTAGACTTAGCCGCCGAATCTTGGGGAATC
AAGGTCAATCGATACGAAATCGTAAACATCACTCCCCCTAAGTCCATTTTAGAAGCGATGGAAAAAGAAAAAAAAGCGCA
GATTTCAAAAAAGGCGCAGATCTCTCTTTCGGAAGGGGATAGGGACGCGAGAATCAACCGATCTCTCGGTTTTAAAGAAG
AAGCCATCAACAAGTCTGAAGGCGAAAAACAAAAAAGAATCAACGAAGCCGAAGGAGTCGCTAAAGAAGTGGAAGCCATT
GGAATTGCAACCGCAAAAGGGATCGAACTACTCGCTCAGTCGATCAACGCAAAAGGTGGACAGGACGCAGTTAAACTCAG
AATCGGTCAAAAATTTATCAAAGAATTTGAGAAGATTTCCGACAAAAAAACGGAAATCGTTTTACCTCTCAATTTGACGA
ATTTCCGCTCGATCTTAAAATCGGTTTTAGGAAATACGGATCAAAAAAATTGA

Upstream 100 bases:

>100_bases
GCGGAGCTTGCCAATATTGCGGGAGTGTTCGAAGGTTTTTCCAAAGTAACCGGAAAATTACCGGAAATCAAAACACCGAA
AGAGAAGGAAGGTCAGTAAG

Downstream 100 bases:

>100_bases
ATGTTATTTTCAAAGCAGAAACGACTTTTTCGTTGGAGTTTCTACCACGAACTTGTTCCTAAAACATTTCAACAAAGTTT
ATAAGTAGAAGTTCATTCAA

Product: HflC membrane associated protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
METFQNTFVMIFWTLFGIYFAYKLYRSIRIVSAQDCIVVERLGKYSRTLHAGLHLLWPFLEKDAYYHTLKEQATDVPPQT
CITKDNVKVEMDGILYLKVLDPYKASYGINDYQFAASQLAQTTMRAIIGTMDLDVTFETRDAINSKILEVLDLAAESWGI
KVNRYEIVNITPPKSILEAMEKEKKAQISKKAQISLSEGDRDARINRSLGFKEEAINKSEGEKQKRINEAEGVAKEVEAI
GIATAKGIELLAQSINAKGGQDAVKLRIGQKFIKEFEKISDKKTEIVLPLNLTNFRSILKSVLGNTDQKN

Sequences:

>Translated_310_residues
METFQNTFVMIFWTLFGIYFAYKLYRSIRIVSAQDCIVVERLGKYSRTLHAGLHLLWPFLEKDAYYHTLKEQATDVPPQT
CITKDNVKVEMDGILYLKVLDPYKASYGINDYQFAASQLAQTTMRAIIGTMDLDVTFETRDAINSKILEVLDLAAESWGI
KVNRYEIVNITPPKSILEAMEKEKKAQISKKAQISLSEGDRDARINRSLGFKEEAINKSEGEKQKRINEAEGVAKEVEAI
GIATAKGIELLAQSINAKGGQDAVKLRIGQKFIKEFEKISDKKTEIVLPLNLTNFRSILKSVLGNTDQKN
>Mature_310_residues
METFQNTFVMIFWTLFGIYFAYKLYRSIRIVSAQDCIVVERLGKYSRTLHAGLHLLWPFLEKDAYYHTLKEQATDVPPQT
CITKDNVKVEMDGILYLKVLDPYKASYGINDYQFAASQLAQTTMRAIIGTMDLDVTFETRDAINSKILEVLDLAAESWGI
KVNRYEIVNITPPKSILEAMEKEKKAQISKKAQISLSEGDRDARINRSLGFKEEAINKSEGEKQKRINEAEGVAKEVEAI
GIATAKGIELLAQSINAKGGQDAVKLRIGQKFIKEFEKISDKKTEIVLPLNLTNFRSILKSVLGNTDQKN

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=274, Percent_Identity=39.051094890511, Blast_Score=209, Evalue=3e-54,
Organism=Homo sapiens, GI221316744, Length=201, Percent_Identity=30.3482587064677, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI21686995, Length=201, Percent_Identity=30.3482587064677, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI38016911, Length=210, Percent_Identity=29.5238095238095, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1786697, Length=296, Percent_Identity=32.7702702702703, Blast_Score=172, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI32564147, Length=283, Percent_Identity=39.9293286219081, Blast_Score=212, Evalue=2e-55,
Organism=Caenorhabditis elegans, GI17569497, Length=205, Percent_Identity=29.7560975609756, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17569493, Length=222, Percent_Identity=31.981981981982, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI193209764, Length=222, Percent_Identity=31.981981981982, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71989955, Length=185, Percent_Identity=31.8918918918919, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI71989948, Length=185, Percent_Identity=31.8918918918919, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17570161, Length=206, Percent_Identity=28.1553398058252, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI193210507, Length=206, Percent_Identity=28.1553398058252, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI32566490, Length=250, Percent_Identity=28, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI71987612, Length=233, Percent_Identity=29.1845493562232, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71987621, Length=221, Percent_Identity=28.9592760180996, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI25153583, Length=233, Percent_Identity=29.1845493562232, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17569499, Length=226, Percent_Identity=29.2035398230088, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71989963, Length=127, Percent_Identity=31.496062992126, Blast_Score=71, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17570459, Length=181, Percent_Identity=27.6243093922652, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45550506, Length=264, Percent_Identity=41.6666666666667, Blast_Score=211, Evalue=5e-55,
Organism=Drosophila melanogaster, GI281361631, Length=199, Percent_Identity=26.1306532663317, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281361633, Length=199, Percent_Identity=26.1306532663317, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI45556022, Length=227, Percent_Identity=28.6343612334802, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21356845, Length=197, Percent_Identity=25.8883248730964, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI28573263, Length=201, Percent_Identity=26.865671641791, Blast_Score=88, Evalue=9e-18,
Organism=Drosophila melanogaster, GI62484448, Length=221, Percent_Identity=28.9592760180996, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI62484274, Length=221, Percent_Identity=28.9592760180996, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI18860517, Length=201, Percent_Identity=28.8557213930348, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI281365664, Length=221, Percent_Identity=28.9592760180996, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24657857, Length=221, Percent_Identity=28.9592760180996, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281361635, Length=132, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 35054; Mature: 35054

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METFQNTFVMIFWTLFGIYFAYKLYRSIRIVSAQDCIVVERLGKYSRTLHAGLHLLWPFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EKDAYYHTLKEQATDVPPQTCITKDNVKVEMDGILYLKVLDPYKASYGINDYQFAASQLA
HHHHHHHHHHHHHCCCCCHHCCCCCCCEEEECCEEEEEEECCHHHHCCCCHHHHHHHHHH
QTTMRAIIGTMDLDVTFETRDAINSKILEVLDLAAESWGIKVNRYEIVNITPPKSILEAM
HHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCHHHHHHH
EKEKKAQISKKAQISLSEGDRDARINRSLGFKEEAINKSEGEKQKRINEAEGVAKEVEAI
HHHHHHHHHHHHEEEECCCCCCHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
GIATAKGIELLAQSINAKGGQDAVKLRIGQKFIKEFEKISDKKTEIVLPLNLTNFRSILK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
SVLGNTDQKN
HHHCCCCCCC
>Mature Secondary Structure
METFQNTFVMIFWTLFGIYFAYKLYRSIRIVSAQDCIVVERLGKYSRTLHAGLHLLWPFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EKDAYYHTLKEQATDVPPQTCITKDNVKVEMDGILYLKVLDPYKASYGINDYQFAASQLA
HHHHHHHHHHHHHCCCCCHHCCCCCCCEEEECCEEEEEEECCHHHHCCCCHHHHHHHHHH
QTTMRAIIGTMDLDVTFETRDAINSKILEVLDLAAESWGIKVNRYEIVNITPPKSILEAM
HHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCHHHHHHH
EKEKKAQISKKAQISLSEGDRDARINRSLGFKEEAINKSEGEKQKRINEAEGVAKEVEAI
HHHHHHHHHHHHEEEECCCCCCHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
GIATAKGIELLAQSINAKGGQDAVKLRIGQKFIKEFEKISDKKTEIVLPLNLTNFRSILK
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
SVLGNTDQKN
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]