Click here to switch to the map view.

The map label for this gene is 116327818

Identifier: 116327818

GI number: 116327818

Start: 1276118

End: 1276423

Strand: Reverse

Name: 116327818

Synonym: LBL_1086

Alternate gene names: NA

Gene position: 1276423-1276118 (Counterclockwise)

Preceding gene: 116327819

Following gene: 116327817

Centisome position: 35.31

GC content: 34.31

Gene sequence:

>306_bases
ATGATCCACGAAGTTCTGCGTTTATTGCGTGTCTTTCACGATTTGAAAGCCAAAGACCTTGCAGAGAAATTATCGATCTC
GCCTTCTTATCTTTCTGAGATTGAAAATGGAAAGAAAGAACCCACACTAGAATTACTCAATAAATACAGTGTTGTTTTTA
ATATGCCAGTATCTTCGATTTTTTTATTATCTGAAGGAACGGAAAAACAAAGTGATAAAAAGTCATTTAAAGGTTCTCTT
AGTAAGCTAATTATCAATTTTTTGCATAAAGTCGAAGGGGAAGAGAATGCACACAGTTCACGGTAA

Upstream 100 bases:

>100_bases
TTCTAAGGACTGAATAGTCTGTGGCGCTCTCAAAAAAATGGAATAACTAATCTCCTGTTCTATTCATACTCTTACTAAAT
TCTAATAGGAGCTATTGGAT

Downstream 100 bases:

>100_bases
CTTTTTTTATAAACTTTCAAACAAAAAAAGATTAGCGAAGTACTTACGTGTTTCCCTCAAAGAACTCCTTACTCTCCAAG
ATGATTCAAACTATAAAGTA

Product: transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Hypotethical Transcriptional Regulator; Helix-Turn-Helix Domain Protein

Number of amino acids: Translated: 101; Mature: 101

Protein sequence:

>101_residues
MIHEVLRLLRVFHDLKAKDLAEKLSISPSYLSEIENGKKEPTLELLNKYSVVFNMPVSSIFLLSEGTEKQSDKKSFKGSL
SKLIINFLHKVEGEENAHSSR

Sequences:

>Translated_101_residues
MIHEVLRLLRVFHDLKAKDLAEKLSISPSYLSEIENGKKEPTLELLNKYSVVFNMPVSSIFLLSEGTEKQSDKKSFKGSL
SKLIINFLHKVEGEENAHSSR
>Mature_101_residues
MIHEVLRLLRVFHDLKAKDLAEKLSISPSYLSEIENGKKEPTLELLNKYSVVFNMPVSSIFLLSEGTEKQSDKKSFKGSL
SKLIINFLHKVEGEENAHSSR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11487; Mature: 11487

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHEVLRLLRVFHDLKAKDLAEKLSISPSYLSEIENGKKEPTLELLNKYSVVFNMPVSSI
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
FLLSEGTEKQSDKKSFKGSLSKLIINFLHKVEGEENAHSSR
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIHEVLRLLRVFHDLKAKDLAEKLSISPSYLSEIENGKKEPTLELLNKYSVVFNMPVSSI
CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
FLLSEGTEKQSDKKSFKGSLSKLIINFLHKVEGEENAHSSR
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA