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The map label for this gene is 116327817

Identifier: 116327817

GI number: 116327817

Start: 1275208

End: 1276137

Strand: Reverse

Name: 116327817

Synonym: LBL_1085

Alternate gene names: NA

Gene position: 1276137-1275208 (Counterclockwise)

Preceding gene: 116327818

Following gene: 116327815

Centisome position: 35.31

GC content: 32.9

Gene sequence:

>930_bases
ATGCACACAGTTCACGGTAACTTTTTTTATAAACTTTCAAACAAAAAAAGATTAGCGAAGTACTTACGTGTTTCCCTCAA
AGAACTCCTTACTCTCCAAGATGATTCAAACTATAAAGTATGGTCTGAGGAAGGAGAAAACGGAAAACTCAGAGAAATAC
AAGAGCCCGTCTATAAACTCAAATCAGTACATTCAAAAATTCAAAAGTCTCTTGCTTCGATTGTAGCGCCAGAATTTCTT
TTTTCAGGAGTAAAAGGAAAATCAAATATTTCCAATGCGTCATATCATAAAGATGGCAACTATATAGTAACGGCGGACAT
TCAAAGCTTTTACATTAACTGCAATAAAGAACACATTTTTAGATTCTTTAAATATACGCTTCGCACTTCAGATGATATTG
CGCGAATACTAACTGAGCTTTGCTGCTATAAAACTTTCCTGCCAACAGGCAGTCCGGTCAGCCAAATCTTAGCCTACCAT
TCTTACGCAAGAATATTCAATAGAATTGATGCTTTTTCAAAAGCGAACGATATCACTTTCTCCTTATATGTAGACGATAT
TACGCTATCTTCAGAAAAATCTATTCATCGTTATATCCTAAAGACAATATCAAAACTTCTAAAGTCCGTAAACTTATCAT
TGAAAAAAGAAAAAACAAAATTTTATAATAAAAACTCCTACAAAATAGTAACAGGATGCGCGATTAGTCCTGATCACATA
CTATTACGACCTAATAAAATTATGAGAAAGATCGATAATAAACTCTGTAAACATGAAAAGGATCTATCGAAATTAACTCC
AAAAGAAATCGAAAGCGTTTTAGGCCAAGTGATATATTTAAGATCTATAACCCCGAATTCTTACCCCCAATTATTCAAAT
CTTTAAGCTTAATGAAAACAGAAGAAAAAATTAAACAGAGACCCTTGTAA

Upstream 100 bases:

>100_bases
TTATCTGAAGGAACGGAAAAACAAAGTGATAAAAAGTCATTTAAAGGTTCTCTTAGTAAGCTAATTATCAATTTTTTGCA
TAAAGTCGAAGGGGAAGAGA

Downstream 100 bases:

>100_bases
AATATAATTCTCTAATATATCTTTCGAATTATTATAGCCAGCCAAGGACGACCGGCGTCTTAAATGAGGGGCGCGGAATT
TCACCTAACTCAAACTCTAC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: EC86-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MHTVHGNFFYKLSNKKRLAKYLRVSLKELLTLQDDSNYKVWSEEGENGKLREIQEPVYKLKSVHSKIQKSLASIVAPEFL
FSGVKGKSNISNASYHKDGNYIVTADIQSFYINCNKEHIFRFFKYTLRTSDDIARILTELCCYKTFLPTGSPVSQILAYH
SYARIFNRIDAFSKANDITFSLYVDDITLSSEKSIHRYILKTISKLLKSVNLSLKKEKTKFYNKNSYKIVTGCAISPDHI
LLRPNKIMRKIDNKLCKHEKDLSKLTPKEIESVLGQVIYLRSITPNSYPQLFKSLSLMKTEEKIKQRPL

Sequences:

>Translated_309_residues
MHTVHGNFFYKLSNKKRLAKYLRVSLKELLTLQDDSNYKVWSEEGENGKLREIQEPVYKLKSVHSKIQKSLASIVAPEFL
FSGVKGKSNISNASYHKDGNYIVTADIQSFYINCNKEHIFRFFKYTLRTSDDIARILTELCCYKTFLPTGSPVSQILAYH
SYARIFNRIDAFSKANDITFSLYVDDITLSSEKSIHRYILKTISKLLKSVNLSLKKEKTKFYNKNSYKIVTGCAISPDHI
LLRPNKIMRKIDNKLCKHEKDLSKLTPKEIESVLGQVIYLRSITPNSYPQLFKSLSLMKTEEKIKQRPL
>Mature_309_residues
MHTVHGNFFYKLSNKKRLAKYLRVSLKELLTLQDDSNYKVWSEEGENGKLREIQEPVYKLKSVHSKIQKSLASIVAPEFL
FSGVKGKSNISNASYHKDGNYIVTADIQSFYINCNKEHIFRFFKYTLRTSDDIARILTELCCYKTFLPTGSPVSQILAYH
SYARIFNRIDAFSKANDITFSLYVDDITLSSEKSIHRYILKTISKLLKSVNLSLKKEKTKFYNKNSYKIVTGCAISPDHI
LLRPNKIMRKIDNKLCKHEKDLSKLTPKEIESVLGQVIYLRSITPNSYPQLFKSLSLMKTEEKIKQRPL

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 35787; Mature: 35787

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTVHGNFFYKLSNKKRLAKYLRVSLKELLTLQDDSNYKVWSEEGENGKLREIQEPVYKL
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHH
KSVHSKIQKSLASIVAPEFLFSGVKGKSNISNASYHKDGNYIVTADIQSFYINCNKEHIF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEEEEHEEEEEECCHHHHH
RFFKYTLRTSDDIARILTELCCYKTFLPTGSPVSQILAYHSYARIFNRIDAFSKANDITF
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
SLYVDDITLSSEKSIHRYILKTISKLLKSVNLSLKKEKTKFYNKNSYKIVTGCAISPDHI
EEEEECEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCE
LLRPNKIMRKIDNKLCKHEKDLSKLTPKEIESVLGQVIYLRSITPNSYPQLFKSLSLMKT
EECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EEKIKQRPL
HHHHHCCCC
>Mature Secondary Structure
MHTVHGNFFYKLSNKKRLAKYLRVSLKELLTLQDDSNYKVWSEEGENGKLREIQEPVYKL
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHH
KSVHSKIQKSLASIVAPEFLFSGVKGKSNISNASYHKDGNYIVTADIQSFYINCNKEHIF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCEEEEEEHEEEEEECCHHHHH
RFFKYTLRTSDDIARILTELCCYKTFLPTGSPVSQILAYHSYARIFNRIDAFSKANDITF
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
SLYVDDITLSSEKSIHRYILKTISKLLKSVNLSLKKEKTKFYNKNSYKIVTGCAISPDHI
EEEEECEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCE
LLRPNKIMRKIDNKLCKHEKDLSKLTPKEIESVLGQVIYLRSITPNSYPQLFKSLSLMKT
EECCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
EEKIKQRPL
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2466573; 1722556 [H]