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The map label for this gene is rlmI [H]

Identifier: 115353185

GI number: 115353185

Start: 3452306

End: 3453520

Strand: Direct

Name: rlmI [H]

Synonym: Bamb_3134

Alternate gene names: 115353185

Gene position: 3452306-3453520 (Clockwise)

Preceding gene: 115353184

Following gene: 115353186

Centisome position: 97.07

GC content: 68.72

Gene sequence:

>1215_bases
ATGCAAACCGTCACCCTCAAGCCGTCCAAGGAAAAATCGCTGCTGCGCCGCCATCCGTGGATCTACGCCAATGCGATCGA
CCGCGTCGACGGCAAGCCTGCGCCCGGCGCGACCGTCATCGTGCGTGCGCACGACGGCCGCTTCCTCGCGCGCGGCGCGT
ACAGCCCGCAGTCGCAGATCCGCGTGCGCGTGTGGAGCTTCGACGAGAACGAGCCGATCGATCACGCATTCTTCAAGCGC
CGCGTGCAGCGCGCGGTCGCGCACCGTACGACGATGGTGTCGGGCACGGGCGCGGTGCGGCTCGTGTTCGGCGAGGCCGA
CGGGCTGCCGGGGCTGATCGTCGACTACTACGTCGCGGACACGGCCGAAGCCGGCGCCACGCCGCGCGGCCAGCTCGTCT
GCCAGTTCATGGCCGCGGGCGTCGAAGCGTGGAAGGAGGCGATCGTCGCGGCGCTCACCAGCGCGACCGGCTGCCCGAAC
GTGTACGAGCGCTCGGACGTGTCGATCCGCGACAAGGAAGGGCTTGAACAAACGACCGGCGTGCTGGCCGGCGATGCGCC
GCCCGCGACGCTGATCGCGAACGAAAACGGCGTGCGCTATCACGTCGACGTGCCGAACGGCCACAAGACGGGGTTCTACG
TCGATCAGCGCGACAACCGCGCGCTGGTCGCGCAGTACGCGGCCGAGCGCGACGTGCTGAACTGCTTCTGCTACACGGGC
GGCTTCTCGCTCGCGGCGCTCAAGGGCGGCGCGAAACGCGTCGTGTCGATCGATTCGTCGGGCGATGCGCTCGCGCTCGC
GCAGCAGAACGTCGTGGCCAACGGCTTCGACGCCGAACGCGCGACCTGGCTCGACGCCGATGCATTCAAGACGCTGCGCC
GCCTCGTCGACGAAGGCGAGCGTTTCGACCTGATCGTGCTCGATCCGCCGAAGTTCGCGCCGACCCGCGACAGCGTCGAT
CGCGCGGCGCGCGCCTACAAGGACATCAACCTGAGCGGCTTCAAGCTGCTGCGCCCGGGCGGCCTGCTGTTCACGTACTC
GTGCTCGGGCGCGATCGACATGGACCTGTTCCAGAAGATCGTCGCGGGCGCGGCGGCCGACGCGAAAGTCGACGCGCGCA
TCCTGAAGCGGCTCGGCGCGGGCGTCGACCACCCGCTGCTCGCCGCGTTCCCGGAAGGCGAATATCTGAAGGGCCTGCTG
TTGCAAATCGTCTGA

Upstream 100 bases:

>100_bases
CCGCGCGCGAAGAAGCGCGACTGACGCGCGTCCCGTGTTACCCGCCGCGCGCGGCGGCCGGCCACGGCCGGCGTCGCGCA
CGGCCCATTTCGATCTCATC

Downstream 100 bases:

>100_bases
TCGCCCCGATCTTGGCGGACAACCCGGCGCGCCAGCCCGATCTGGCGGGCCAGCGCTTTCGCCTGTCGTCCGGACGACGG
GCGTGGGCTTGACAGGTATG

Product: PUA domain-containing protein

Products: NA

Alternate protein names: 23S rRNA m5C1962 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase RlmI [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MQTVTLKPSKEKSLLRRHPWIYANAIDRVDGKPAPGATVIVRAHDGRFLARGAYSPQSQIRVRVWSFDENEPIDHAFFKR
RVQRAVAHRTTMVSGTGAVRLVFGEADGLPGLIVDYYVADTAEAGATPRGQLVCQFMAAGVEAWKEAIVAALTSATGCPN
VYERSDVSIRDKEGLEQTTGVLAGDAPPATLIANENGVRYHVDVPNGHKTGFYVDQRDNRALVAQYAAERDVLNCFCYTG
GFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAERATWLDADAFKTLRRLVDEGERFDLIVLDPPKFAPTRDSVD
RAARAYKDINLSGFKLLRPGGLLFTYSCSGAIDMDLFQKIVAGAAADAKVDARILKRLGAGVDHPLLAAFPEGEYLKGLL
LQIV

Sequences:

>Translated_404_residues
MQTVTLKPSKEKSLLRRHPWIYANAIDRVDGKPAPGATVIVRAHDGRFLARGAYSPQSQIRVRVWSFDENEPIDHAFFKR
RVQRAVAHRTTMVSGTGAVRLVFGEADGLPGLIVDYYVADTAEAGATPRGQLVCQFMAAGVEAWKEAIVAALTSATGCPN
VYERSDVSIRDKEGLEQTTGVLAGDAPPATLIANENGVRYHVDVPNGHKTGFYVDQRDNRALVAQYAAERDVLNCFCYTG
GFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAERATWLDADAFKTLRRLVDEGERFDLIVLDPPKFAPTRDSVD
RAARAYKDINLSGFKLLRPGGLLFTYSCSGAIDMDLFQKIVAGAAADAKVDARILKRLGAGVDHPLLAAFPEGEYLKGLL
LQIV
>Mature_404_residues
MQTVTLKPSKEKSLLRRHPWIYANAIDRVDGKPAPGATVIVRAHDGRFLARGAYSPQSQIRVRVWSFDENEPIDHAFFKR
RVQRAVAHRTTMVSGTGAVRLVFGEADGLPGLIVDYYVADTAEAGATPRGQLVCQFMAAGVEAWKEAIVAALTSATGCPN
VYERSDVSIRDKEGLEQTTGVLAGDAPPATLIANENGVRYHVDVPNGHKTGFYVDQRDNRALVAQYAAERDVLNCFCYTG
GFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAERATWLDADAFKTLRRLVDEGERFDLIVLDPPKFAPTRDSVD
RAARAYKDINLSGFKLLRPGGLLFTYSCSGAIDMDLFQKIVAGAAADAKVDARILKRLGAGVDHPLLAAFPEGEYLKGLL
LQIV

Specific function: Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA [H]

COG id: COG1092

COG function: function code R; Predicted SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PUA domain [H]

Homologues:

Organism=Escherichia coli, GI145693111, Length=403, Percent_Identity=45.9057071960298, Blast_Score=381, Evalue=1e-107,
Organism=Escherichia coli, GI1787181, Length=169, Percent_Identity=30.1775147928994, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002478
- InterPro:   IPR015947
- InterPro:   IPR019614 [H]

Pfam domain/function: PF10672 Methyltrans_SAM [H]

EC number: =2.1.1.191 [H]

Molecular weight: Translated: 43749; Mature: 43749

Theoretical pI: Translated: 7.90; Mature: 7.90

Prosite motif: PS50890 PUA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTVTLKPSKEKSLLRRHPWIYANAIDRVDGKPAPGATVIVRAHDGRFLARGAYSPQSQI
CCEEECCCCHHHHHHHHCCCEEEEHHHCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCE
RVRVWSFDENEPIDHAFFKRRVQRAVAHRTTMVSGTGAVRLVFGEADGLPGLIVDYYVAD
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCCCEEEEEEECC
TAEAGATPRGQLVCQFMAAGVEAWKEAIVAALTSATGCPNVYERSDVSIRDKEGLEQTTG
CHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHC
VLAGDAPPATLIANENGVRYHVDVPNGHKTGFYVDQRDNRALVAQYAAERDVLNCFCYTG
EEECCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEEECC
GFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAERATWLDADAFKTLRRLVDEGE
CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHCCCC
RFDLIVLDPPKFAPTRDSVDRAARAYKDINLSGFKLLRPGGLLFTYSCSGAIDMDLFQKI
CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHH
VAGAAADAKVDARILKRLGAGVDHPLLAAFPEGEYLKGLLLQIV
HHCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MQTVTLKPSKEKSLLRRHPWIYANAIDRVDGKPAPGATVIVRAHDGRFLARGAYSPQSQI
CCEEECCCCHHHHHHHHCCCEEEEHHHCCCCCCCCCCEEEEEECCCCEEEECCCCCCCCE
RVRVWSFDENEPIDHAFFKRRVQRAVAHRTTMVSGTGAVRLVFGEADGLPGLIVDYYVAD
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEECCCEEEEEEECCCCCCCEEEEEEECC
TAEAGATPRGQLVCQFMAAGVEAWKEAIVAALTSATGCPNVYERSDVSIRDKEGLEQTTG
CHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHC
VLAGDAPPATLIANENGVRYHVDVPNGHKTGFYVDQRDNRALVAQYAAERDVLNCFCYTG
EEECCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEEECC
GFSLAALKGGAKRVVSIDSSGDALALAQQNVVANGFDAERATWLDADAFKTLRRLVDEGE
CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHCCCC
RFDLIVLDPPKFAPTRDSVDRAARAYKDINLSGFKLLRPGGLLFTYSCSGAIDMDLFQKI
CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHH
VAGAAADAKVDARILKRLGAGVDHPLLAAFPEGEYLKGLLLQIV
HHCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA