Click here to switch to the map view.

The map label for this gene is yjiA [H]

Identifier: 115353186

GI number: 115353186

Start: 3453626

End: 3454792

Strand: Direct

Name: yjiA [H]

Synonym: Bamb_3135

Alternate gene names: 115353186

Gene position: 3453626-3454792 (Clockwise)

Preceding gene: 115353185

Following gene: 115353187

Centisome position: 97.11

GC content: 62.04

Gene sequence:

>1167_bases
ATGGATGGTTGTGCGCCCCCGCTCGTAGCGGGAGGCGCGACGCACATCCTGGTTTTGACCCCGATTCACGAACCACAGGC
GACCGACATGGCCACTCCCGTCACCATCCTCACCGGCTTCCTCGGCAGCGGCAAGACGACGCTGCTCAAGCGCATCCTGA
ACGAACAGCACGGCATGAAGATCGCCGTGATCGAGAACGAGTTCGGCGAAGAGAACATCGACAACGAGATCCTCGTGCAG
GACTCGAACGAGCAGATCATCCAGATGAGCAACGGCTGCATCTGCTGCACGATCCGCGGCGACCTCGCCCGCGCGCTCGG
CGATCTGGCCGCGAAGAAGCGCGAAGGCAAGCTCGACTTCGACCGCATCGTGATCGAAACCACCGGCCTCGCGAATCCGG
GCCCCGTCGCGCAAACTTTCTTCATCGACAGCGAAATCGCCGACGACTTCCTGCTCGACGCGGTCATCACGCTCGTCGAC
GCGAAGCACGCGAACGCGCAGCTCGACGAACACGAAGTCGTGCAGCGCCAGGTCGGCTTCGCCGATCGCCTGTTCATCAC
GAAGTCGGACCTCGTCGACGACCAGACCGTCGCCGGCCTCAAGCACCGCCTGATGCACATGAACCCGAAGGCGACGATCA
AGATCGTCAACTTCGGCGAAGCCGACATCAAGGAAATCTTCGACCTGCGCGGCTTCAACCTGAACGCGAAGCTCGAGATC
GACCCGGATTTCCTCGCCGAAGACGACCACGCGCACGCTCACCACGAGCACGGCCATGATCACGATCACGCCGATTGCGA
CCACGATCACGGCCAATGCGCGCACGATCACGACCACGGCCATCATCACCATCACCATGCGCACCACGACGACAAGATCA
AGTCGTTCGTGTATCGCAACGACCGCCCGTTCGACCCGAACAAGCTGGAAGACTTCCTCGGCGGGATCCTGCAGATCTAC
GGCGAACGGATGCTGCGCTACAAGGGCGTGCTGTACATGAAGGGCGTCGATCGCAAGGTCGTGTTCCAGGGCGTGCACCA
GATGATGGGCAGCGACCTCGCCGCGAAGTGGCTGCCGGTCGAGAAGAAGACCAACAAGATGGTGTTCATCGGCGTCGATC
TGCCGCAGGACCTGATCACCGACGGCCTCGACGCCTGCCTCGCCTGA

Upstream 100 bases:

>100_bases
CCGATCTTGGCGGACAACCCGGCGCGCCAGCCCGATCTGGCGGGCCAGCGCTTTCGCCTGTCGTCCGGACGACGGGCGTG
GGCTTGACAGGTATGTTTCA

Downstream 100 bases:

>100_bases
GCGTTCCGGCCCCGGCATCGGGTGCCTTTCACGCGGCCGCCTTAAGGGGCGGCCGCGGTGCTTGGCGGGTGCCTTGCGCG
GCAAGGGTTTCACCGTCATC

Product: cobalamin synthesis protein, P47K

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MDGCAPPLVAGGATHILVLTPIHEPQATDMATPVTILTGFLGSGKTTLLKRILNEQHGMKIAVIENEFGEENIDNEILVQ
DSNEQIIQMSNGCICCTIRGDLARALGDLAAKKREGKLDFDRIVIETTGLANPGPVAQTFFIDSEIADDFLLDAVITLVD
AKHANAQLDEHEVVQRQVGFADRLFITKSDLVDDQTVAGLKHRLMHMNPKATIKIVNFGEADIKEIFDLRGFNLNAKLEI
DPDFLAEDDHAHAHHEHGHDHDHADCDHDHGQCAHDHDHGHHHHHHAHHDDKIKSFVYRNDRPFDPNKLEDFLGGILQIY
GERMLRYKGVLYMKGVDRKVVFQGVHQMMGSDLAAKWLPVEKKTNKMVFIGVDLPQDLITDGLDACLA

Sequences:

>Translated_388_residues
MDGCAPPLVAGGATHILVLTPIHEPQATDMATPVTILTGFLGSGKTTLLKRILNEQHGMKIAVIENEFGEENIDNEILVQ
DSNEQIIQMSNGCICCTIRGDLARALGDLAAKKREGKLDFDRIVIETTGLANPGPVAQTFFIDSEIADDFLLDAVITLVD
AKHANAQLDEHEVVQRQVGFADRLFITKSDLVDDQTVAGLKHRLMHMNPKATIKIVNFGEADIKEIFDLRGFNLNAKLEI
DPDFLAEDDHAHAHHEHGHDHDHADCDHDHGQCAHDHDHGHHHHHHAHHDDKIKSFVYRNDRPFDPNKLEDFLGGILQIY
GERMLRYKGVLYMKGVDRKVVFQGVHQMMGSDLAAKWLPVEKKTNKMVFIGVDLPQDLITDGLDACLA
>Mature_388_residues
MDGCAPPLVAGGATHILVLTPIHEPQATDMATPVTILTGFLGSGKTTLLKRILNEQHGMKIAVIENEFGEENIDNEILVQ
DSNEQIIQMSNGCICCTIRGDLARALGDLAAKKREGKLDFDRIVIETTGLANPGPVAQTFFIDSEIADDFLLDAVITLVD
AKHANAQLDEHEVVQRQVGFADRLFITKSDLVDDQTVAGLKHRLMHMNPKATIKIVNFGEADIKEIFDLRGFNLNAKLEI
DPDFLAEDDHAHAHHEHGHDHDHADCDHDHGQCAHDHDHGHHHHHHAHHDDKIKSFVYRNDRPFDPNKLEDFLGGILQIY
GERMLRYKGVLYMKGVDRKVVFQGVHQMMGSDLAAKWLPVEKKTNKMVFIGVDLPQDLITDGLDACLA

Specific function: Binds GTP. May function as GTP-dependent regulator [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI126722884, Length=380, Percent_Identity=30, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI146231952, Length=380, Percent_Identity=30.7894736842105, Blast_Score=165, Evalue=7e-41,
Organism=Homo sapiens, GI33469141, Length=359, Percent_Identity=30.6406685236769, Blast_Score=165, Evalue=7e-41,
Organism=Homo sapiens, GI148727351, Length=380, Percent_Identity=30, Blast_Score=162, Evalue=4e-40,
Organism=Homo sapiens, GI223941779, Length=380, Percent_Identity=30.2631578947368, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI223941776, Length=350, Percent_Identity=29.4285714285714, Blast_Score=148, Evalue=7e-36,
Organism=Homo sapiens, GI119120938, Length=165, Percent_Identity=41.8181818181818, Blast_Score=126, Evalue=3e-29,
Organism=Escherichia coli, GI87082430, Length=347, Percent_Identity=38.328530259366, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI1788499, Length=183, Percent_Identity=31.6939890710383, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324356, Length=237, Percent_Identity=29.1139240506329, Blast_Score=116, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 43228; Mature: 43228

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGCAPPLVAGGATHILVLTPIHEPQATDMATPVTILTGFLGSGKTTLLKRILNEQHGMK
CCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCE
IAVIENEFGEENIDNEILVQDSNEQIIQMSNGCICCTIRGDLARALGDLAAKKREGKLDF
EEEEECCCCCCCCCCCEEEECCCCCEEEECCCEEEEEECHHHHHHHHHHHHHHCCCCCCC
DRIVIETTGLANPGPVAQTFFIDSEIADDFLLDAVITLVDAKHANAQLDEHEVVQRQVGF
EEEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
ADRLFITKSDLVDDQTVAGLKHRLMHMNPKATIKIVNFGEADIKEIFDLRGFNLNAKLEI
HHEEEEEHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEE
DPDFLAEDDHAHAHHEHGHDHDHADCDHDHGQCAHDHDHGHHHHHHAHHDDKIKSFVYRN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
DRPFDPNKLEDFLGGILQIYGERMLRYKGVLYMKGVDRKVVFQGVHQMMGSDLAAKWLPV
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCHHHHCCCC
EKKTNKMVFIGVDLPQDLITDGLDACLA
CCCCCEEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MDGCAPPLVAGGATHILVLTPIHEPQATDMATPVTILTGFLGSGKTTLLKRILNEQHGMK
CCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCE
IAVIENEFGEENIDNEILVQDSNEQIIQMSNGCICCTIRGDLARALGDLAAKKREGKLDF
EEEEECCCCCCCCCCCEEEECCCCCEEEECCCEEEEEECHHHHHHHHHHHHHHCCCCCCC
DRIVIETTGLANPGPVAQTFFIDSEIADDFLLDAVITLVDAKHANAQLDEHEVVQRQVGF
EEEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
ADRLFITKSDLVDDQTVAGLKHRLMHMNPKATIKIVNFGEADIKEIFDLRGFNLNAKLEI
HHEEEEEHHHCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEE
DPDFLAEDDHAHAHHEHGHDHDHADCDHDHGQCAHDHDHGHHHHHHAHHDDKIKSFVYRN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
DRPFDPNKLEDFLGGILQIYGERMLRYKGVLYMKGVDRKVVFQGVHQMMGSDLAAKWLPV
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCHHHHCCCC
EKKTNKMVFIGVDLPQDLITDGLDACLA
CCCCCEEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 1650347 [H]