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The map label for this gene is xerC

Identifier: 115353184

GI number: 115353184

Start: 3451309

End: 3452229

Strand: Direct

Name: xerC

Synonym: Bamb_3133

Alternate gene names: 115353184

Gene position: 3451309-3452229 (Clockwise)

Preceding gene: 115353183

Following gene: 115353185

Centisome position: 97.04

GC content: 69.38

Gene sequence:

>921_bases
ATGACCGACGATCCGATCGCCGCCTACCTGTCGAACCTGAAGCACGTCAGGCAGCTGTCGGAACACACGCTGCGTGCGTA
CTCGCACGAACTCGACGAACTGAAGAAACTCGCCGCCGGTCGCCCGCTCGACACGCTGACGGCCGTCGACATGCGCGGCG
CGGTCGCGCGCGCGCATGCGGGCGGATTGTCGGCGCGCTCGATCTCGCACCGGCTGTCCGCCTGGCGCGCGTTCTACCGC
TGGCTCGCGCAGCACATCGAGATGCCCGCGAACCCGGTCGCCGCGGTGCGTGCGCCGAAGCGCCCGAAAACCCTGCCGAA
AGCACTGTCGGTCGACGACGCCTCGGCGCTGATGGACGCGCCGCTCGCCGGCACGACCGAAGGCATCCGCGATCACGCGA
TCCTCGAGCTGTTCTATTCATCGGGGCTGCGCCTCGCCGAACTGGTCGGGCTCGACGTCAGGTACACGCAGGCCGACGGC
TACCGCTCGGCCGGCTGGCTCGATCTCGCCGAAGCCGAAGTCACCGTGCGCGGCAAGGGCAACAAGGAACGCAAGGTGCC
GGTCGGCCGCAAGGCGATCGATGCGCTGAACGCGTGGCTCGCGGTGCGCGGCGAATTCGTGAAGCACGACCCGCATCCGC
TGTTCGTGTCCGTGCGCGGCAACCGGATGGCGCCGGGCGTCGTGCGCGAGCGCGTGAAGCGCGCGGCGCTCGCCGCGGGC
ATCCCCGCCAACGTCCACCCGCACGTGCTGCGTCATTCGTTCGCGACGCACGTGCTGCAGTCGAGCGGCGACCTGCGCGC
GGTGCAGGAACTGCTGGGCCACGCGAGCATCTCCGCGACGCAGGTCTACACGTCGCTCGACTTCCAGCACCTCGCGAAGA
TTTACGACAGCGCGCATCCGCGCGCGAAGAAGCGCGACTGA

Upstream 100 bases:

>100_bases
CGCTTCCACGACGGGATGGCGACCGACTTCCTCGCGCAGATCGCGACGCTTGCGAGCGCCGCGCTCACGCGCCTGCTGCC
GCACTGATGTCGCGCCCGCG

Downstream 100 bases:

>100_bases
CGCGCGTCCCGTGTTACCCGCCGCGCGCGGCGGCCGGCCACGGCCGGCGTCGCGCACGGCCCATTTCGATCTCATCATGC
AAACCGTCACCCTCAAGCCG

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MTDDPIAAYLSNLKHVRQLSEHTLRAYSHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSARSISHRLSAWRAFYR
WLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGTTEGIRDHAILELFYSSGLRLAELVGLDVRYTQADG
YRSAGWLDLAEAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAG
IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD

Sequences:

>Translated_306_residues
MTDDPIAAYLSNLKHVRQLSEHTLRAYSHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSARSISHRLSAWRAFYR
WLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGTTEGIRDHAILELFYSSGLRLAELVGLDVRYTQADG
YRSAGWLDLAEAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAG
IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD
>Mature_305_residues
TDDPIAAYLSNLKHVRQLSEHTLRAYSHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSARSISHRLSAWRAFYRW
LAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGTTEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGY
RSAGWLDLAEAEVTVRGKGNKERKVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAGI
PANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHPRAKKRD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=313, Percent_Identity=45.6869009584665, Blast_Score=250, Evalue=7e-68,
Organism=Escherichia coli, GI1789261, Length=302, Percent_Identity=37.0860927152318, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1790768, Length=192, Percent_Identity=28.6458333333333, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790767, Length=175, Percent_Identity=25.7142857142857, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33553; Mature: 33422

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDDPIAAYLSNLKHVRQLSEHTLRAYSHELDELKKLAAGRPLDTLTAVDMRGAVARAHA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
GGLSARSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCHHCCCCHHHHHHCC
PLAGTTEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKG
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCCCCCEEEECCEEEEECCC
NKERKVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAG
CCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHP
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCCC
RAKKRD
CCCCCC
>Mature Secondary Structure 
TDDPIAAYLSNLKHVRQLSEHTLRAYSHELDELKKLAAGRPLDTLTAVDMRGAVARAHA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
GGLSARSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDA
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCHHCCCCHHHHHHCC
PLAGTTEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKG
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEEEECCCCCCCCCCEEEECCEEEEECCC
NKERKVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAG
CCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC
IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYTSLDFQHLAKIYDSAHP
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCCC
RAKKRD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA