Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352740

Identifier: 115352740

GI number: 115352740

Start: 2962108

End: 2963475

Strand: Direct

Name: 115352740

Synonym: Bamb_2689

Alternate gene names: NA

Gene position: 2962108-2963475 (Clockwise)

Preceding gene: 115352739

Following gene: 115352741

Centisome position: 83.29

GC content: 61.7

Gene sequence:

>1368_bases
ATGCGTTTGTCGCAGGCCGTGTCCGCGGAAACGAACGACGTCCGCGGCACGGCCAGCAACGAGATTCCTCTATCGACTTC
AGCCAATCCCATGCGCCATCGATCTCGACTGAAGGGGCTGGCCGTCATCGCGATCGGCGGCATCGTATTGAATCTGTTTT
ACGAGAGCACCGGTCCTCACTGGAAGACCGTTTCGTCGCAGATCACATGGTCCGACCCGCCAGCAGGTGTGGGTGATTTC
TACATCGCCGGCAACGAAATCATGTCGCTCACGTTTGCCGATCCTGTCGTGACGCTGAAGCCGGCCGGCGAGTGGAAGGT
TCCGACGGTCGCCGAACCCACCGAAGCATGGATGAACAGTGCGGGAGAAACCCTCAATCGACGAACCGTGAATTTCTTCC
GCGGCACGCTCGATCACGGACTGCAGCGCTTCTTGCAAGCGCCCGGCCAACACACCGCGTGGTGGCATTCGCGAGACGGT
CAGGTCCACTTGATCAGCATCGGCTGGCTGGACTATACGTCGCAGCATTCCGAGGACGACCTCGTCTCGCGGCAAACCCG
TGTCTGGAAATCGCTCGACGGCGGCCGCCACTGGTCGCAGATGGCATGGCCGGAGCACGAAGATATCGACGACCTGCTCT
TCATCGACGCGCAGCACGGCTATGCGATTGGCCGCGGCCCCACCGTCCGGCGAACATCCGACGGCGGCGAGTCCTGGCAA
CTGATCGCACTACCGCCGGATGCAGTCGTCCCCAGTGGCCGTCGGCGCAACCTCAGAGCGGTGAATCTTGGTCCCGACGG
CACCCTGCGAGTGGCTTACCATGTCGATCCGTCGGCAACGGGGCCCGCTCGCAGCATGGTATACGGGCTTCCGCCGAATC
AGCAGACGTTCGTTCCCCATATCGTTCTGCCGAACCAGACCGTCATCCGACTCGCTTCGACGCCGGCCACGACCAGCGGT
TACGCGCTTTACGCACTGTCTCTCCTCGACGACGAGGGCGGCAAAGATACGGCACCGGATCGCGCACGCCGGGCCGGCGT
GCTTTCGACGTGGACGGACACGCAACCCGCGCGCGTCCGGCAAGTGATGACGTTTGACATGAAGCTCATCGTGAGCGGCC
TCGACGTGGGCCGCGACGGCCTGTTACTCGTATATGCCACCGATCCCGGGCAAGCAATCGACGATCCACCAATCCCCCTG
ATGATGAGCAGCACTGACGCAGGCAGGACCTGGAAACAGAATGCCGACGGGATCGTCTATCACAACCGGTACTTCGACCA
GGATACGAACACGCTCTACTCGCTGCTCGATGAAAGACTGAAGAAGCTGTCATTCCCCATCCGACATTCCCCCGCCTCAC
AAGACTGA

Upstream 100 bases:

>100_bases
GACAAGGCTTCACAGGGCGGCTACTTCGATCCACAAACGAACACGCTCTATTCGGTGTTCGCCTATACGCTGCGGAAACG
GCAATTCTGATCGGCGCCCG

Downstream 100 bases:

>100_bases
ATCCCCTCGCTACATCCGGAGACCTATTCGATGAAAAAAGCGCTGCATCGCGCCGCATTCGTACTGTGCGCTGCCGCGGC
GGCCACCGCCTCCGCCGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: Glycosyl Hydrolase

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MRLSQAVSAETNDVRGTASNEIPLSTSANPMRHRSRLKGLAVIAIGGIVLNLFYESTGPHWKTVSSQITWSDPPAGVGDF
YIAGNEIMSLTFADPVVTLKPAGEWKVPTVAEPTEAWMNSAGETLNRRTVNFFRGTLDHGLQRFLQAPGQHTAWWHSRDG
QVHLISIGWLDYTSQHSEDDLVSRQTRVWKSLDGGRHWSQMAWPEHEDIDDLLFIDAQHGYAIGRGPTVRRTSDGGESWQ
LIALPPDAVVPSGRRRNLRAVNLGPDGTLRVAYHVDPSATGPARSMVYGLPPNQQTFVPHIVLPNQTVIRLASTPATTSG
YALYALSLLDDEGGKDTAPDRARRAGVLSTWTDTQPARVRQVMTFDMKLIVSGLDVGRDGLLLVYATDPGQAIDDPPIPL
MMSSTDAGRTWKQNADGIVYHNRYFDQDTNTLYSLLDERLKKLSFPIRHSPASQD

Sequences:

>Translated_455_residues
MRLSQAVSAETNDVRGTASNEIPLSTSANPMRHRSRLKGLAVIAIGGIVLNLFYESTGPHWKTVSSQITWSDPPAGVGDF
YIAGNEIMSLTFADPVVTLKPAGEWKVPTVAEPTEAWMNSAGETLNRRTVNFFRGTLDHGLQRFLQAPGQHTAWWHSRDG
QVHLISIGWLDYTSQHSEDDLVSRQTRVWKSLDGGRHWSQMAWPEHEDIDDLLFIDAQHGYAIGRGPTVRRTSDGGESWQ
LIALPPDAVVPSGRRRNLRAVNLGPDGTLRVAYHVDPSATGPARSMVYGLPPNQQTFVPHIVLPNQTVIRLASTPATTSG
YALYALSLLDDEGGKDTAPDRARRAGVLSTWTDTQPARVRQVMTFDMKLIVSGLDVGRDGLLLVYATDPGQAIDDPPIPL
MMSSTDAGRTWKQNADGIVYHNRYFDQDTNTLYSLLDERLKKLSFPIRHSPASQD
>Mature_455_residues
MRLSQAVSAETNDVRGTASNEIPLSTSANPMRHRSRLKGLAVIAIGGIVLNLFYESTGPHWKTVSSQITWSDPPAGVGDF
YIAGNEIMSLTFADPVVTLKPAGEWKVPTVAEPTEAWMNSAGETLNRRTVNFFRGTLDHGLQRFLQAPGQHTAWWHSRDG
QVHLISIGWLDYTSQHSEDDLVSRQTRVWKSLDGGRHWSQMAWPEHEDIDDLLFIDAQHGYAIGRGPTVRRTSDGGESWQ
LIALPPDAVVPSGRRRNLRAVNLGPDGTLRVAYHVDPSATGPARSMVYGLPPNQQTFVPHIVLPNQTVIRLASTPATTSG
YALYALSLLDDEGGKDTAPDRARRAGVLSTWTDTQPARVRQVMTFDMKLIVSGLDVGRDGLLLVYATDPGQAIDDPPIPL
MMSSTDAGRTWKQNADGIVYHNRYFDQDTNTLYSLLDERLKKLSFPIRHSPASQD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50221; Mature: 50221

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSQAVSAETNDVRGTASNEIPLSTSANPMRHRSRLKGLAVIAIGGIVLNLFYESTGPH
CCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEHHHHEEHHHHCCCCC
WKTVSSQITWSDPPAGVGDFYIAGNEIMSLTFADPVVTLKPAGEWKVPTVAEPTEAWMNS
EEECCCEEEECCCCCCCCCEEEECCEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHHHH
AGETLNRRTVNFFRGTLDHGLQRFLQAPGQHTAWWHSRDGQVHLISIGWLDYTSQHSEDD
HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEEECCCCCCCCHH
LVSRQTRVWKSLDGGRHWSQMAWPEHEDIDDLLFIDAQHGYAIGRGPTVRRTSDGGESWQ
HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEEECCCCEEECCCCCEEECCCCCCCEE
LIALPPDAVVPSGRRRNLRAVNLGPDGTLRVAYHVDPSATGPARSMVYGLPPNQQTFVPH
EEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHEEEECCCCCCEECCE
IVLPNQTVIRLASTPATTSGYALYALSLLDDEGGKDTAPDRARRAGVLSTWTDTQPARVR
EECCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHCCCEEECCCCCHHHHH
QVMTFDMKLIVSGLDVGRDGLLLVYATDPGQAIDDPPIPLMMSSTDAGRTWKQNADGIVY
HHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHCCCCEEEE
HNRYFDQDTNTLYSLLDERLKKLSFPIRHSPASQD
ECEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRLSQAVSAETNDVRGTASNEIPLSTSANPMRHRSRLKGLAVIAIGGIVLNLFYESTGPH
CCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEHHHHEEHHHHCCCCC
WKTVSSQITWSDPPAGVGDFYIAGNEIMSLTFADPVVTLKPAGEWKVPTVAEPTEAWMNS
EEECCCEEEECCCCCCCCCEEEECCEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHHHH
AGETLNRRTVNFFRGTLDHGLQRFLQAPGQHTAWWHSRDGQVHLISIGWLDYTSQHSEDD
HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEEECCCCCCCCHH
LVSRQTRVWKSLDGGRHWSQMAWPEHEDIDDLLFIDAQHGYAIGRGPTVRRTSDGGESWQ
HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEEECCCCEEECCCCCEEECCCCCCCEE
LIALPPDAVVPSGRRRNLRAVNLGPDGTLRVAYHVDPSATGPARSMVYGLPPNQQTFVPH
EEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHEEEECCCCCCEECCE
IVLPNQTVIRLASTPATTSGYALYALSLLDDEGGKDTAPDRARRAGVLSTWTDTQPARVR
EECCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHCCCEEECCCCCHHHHH
QVMTFDMKLIVSGLDVGRDGLLLVYATDPGQAIDDPPIPLMMSSTDAGRTWKQNADGIVY
HHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHCCCCEEEE
HNRYFDQDTNTLYSLLDERLKKLSFPIRHSPASQD
ECEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA