| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352740
Identifier: 115352740
GI number: 115352740
Start: 2962108
End: 2963475
Strand: Direct
Name: 115352740
Synonym: Bamb_2689
Alternate gene names: NA
Gene position: 2962108-2963475 (Clockwise)
Preceding gene: 115352739
Following gene: 115352741
Centisome position: 83.29
GC content: 61.7
Gene sequence:
>1368_bases ATGCGTTTGTCGCAGGCCGTGTCCGCGGAAACGAACGACGTCCGCGGCACGGCCAGCAACGAGATTCCTCTATCGACTTC AGCCAATCCCATGCGCCATCGATCTCGACTGAAGGGGCTGGCCGTCATCGCGATCGGCGGCATCGTATTGAATCTGTTTT ACGAGAGCACCGGTCCTCACTGGAAGACCGTTTCGTCGCAGATCACATGGTCCGACCCGCCAGCAGGTGTGGGTGATTTC TACATCGCCGGCAACGAAATCATGTCGCTCACGTTTGCCGATCCTGTCGTGACGCTGAAGCCGGCCGGCGAGTGGAAGGT TCCGACGGTCGCCGAACCCACCGAAGCATGGATGAACAGTGCGGGAGAAACCCTCAATCGACGAACCGTGAATTTCTTCC GCGGCACGCTCGATCACGGACTGCAGCGCTTCTTGCAAGCGCCCGGCCAACACACCGCGTGGTGGCATTCGCGAGACGGT CAGGTCCACTTGATCAGCATCGGCTGGCTGGACTATACGTCGCAGCATTCCGAGGACGACCTCGTCTCGCGGCAAACCCG TGTCTGGAAATCGCTCGACGGCGGCCGCCACTGGTCGCAGATGGCATGGCCGGAGCACGAAGATATCGACGACCTGCTCT TCATCGACGCGCAGCACGGCTATGCGATTGGCCGCGGCCCCACCGTCCGGCGAACATCCGACGGCGGCGAGTCCTGGCAA CTGATCGCACTACCGCCGGATGCAGTCGTCCCCAGTGGCCGTCGGCGCAACCTCAGAGCGGTGAATCTTGGTCCCGACGG CACCCTGCGAGTGGCTTACCATGTCGATCCGTCGGCAACGGGGCCCGCTCGCAGCATGGTATACGGGCTTCCGCCGAATC AGCAGACGTTCGTTCCCCATATCGTTCTGCCGAACCAGACCGTCATCCGACTCGCTTCGACGCCGGCCACGACCAGCGGT TACGCGCTTTACGCACTGTCTCTCCTCGACGACGAGGGCGGCAAAGATACGGCACCGGATCGCGCACGCCGGGCCGGCGT GCTTTCGACGTGGACGGACACGCAACCCGCGCGCGTCCGGCAAGTGATGACGTTTGACATGAAGCTCATCGTGAGCGGCC TCGACGTGGGCCGCGACGGCCTGTTACTCGTATATGCCACCGATCCCGGGCAAGCAATCGACGATCCACCAATCCCCCTG ATGATGAGCAGCACTGACGCAGGCAGGACCTGGAAACAGAATGCCGACGGGATCGTCTATCACAACCGGTACTTCGACCA GGATACGAACACGCTCTACTCGCTGCTCGATGAAAGACTGAAGAAGCTGTCATTCCCCATCCGACATTCCCCCGCCTCAC AAGACTGA
Upstream 100 bases:
>100_bases GACAAGGCTTCACAGGGCGGCTACTTCGATCCACAAACGAACACGCTCTATTCGGTGTTCGCCTATACGCTGCGGAAACG GCAATTCTGATCGGCGCCCG
Downstream 100 bases:
>100_bases ATCCCCTCGCTACATCCGGAGACCTATTCGATGAAAAAAGCGCTGCATCGCGCCGCATTCGTACTGTGCGCTGCCGCGGC GGCCACCGCCTCCGCCGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: Glycosyl Hydrolase
Number of amino acids: Translated: 455; Mature: 455
Protein sequence:
>455_residues MRLSQAVSAETNDVRGTASNEIPLSTSANPMRHRSRLKGLAVIAIGGIVLNLFYESTGPHWKTVSSQITWSDPPAGVGDF YIAGNEIMSLTFADPVVTLKPAGEWKVPTVAEPTEAWMNSAGETLNRRTVNFFRGTLDHGLQRFLQAPGQHTAWWHSRDG QVHLISIGWLDYTSQHSEDDLVSRQTRVWKSLDGGRHWSQMAWPEHEDIDDLLFIDAQHGYAIGRGPTVRRTSDGGESWQ LIALPPDAVVPSGRRRNLRAVNLGPDGTLRVAYHVDPSATGPARSMVYGLPPNQQTFVPHIVLPNQTVIRLASTPATTSG YALYALSLLDDEGGKDTAPDRARRAGVLSTWTDTQPARVRQVMTFDMKLIVSGLDVGRDGLLLVYATDPGQAIDDPPIPL MMSSTDAGRTWKQNADGIVYHNRYFDQDTNTLYSLLDERLKKLSFPIRHSPASQD
Sequences:
>Translated_455_residues MRLSQAVSAETNDVRGTASNEIPLSTSANPMRHRSRLKGLAVIAIGGIVLNLFYESTGPHWKTVSSQITWSDPPAGVGDF YIAGNEIMSLTFADPVVTLKPAGEWKVPTVAEPTEAWMNSAGETLNRRTVNFFRGTLDHGLQRFLQAPGQHTAWWHSRDG QVHLISIGWLDYTSQHSEDDLVSRQTRVWKSLDGGRHWSQMAWPEHEDIDDLLFIDAQHGYAIGRGPTVRRTSDGGESWQ LIALPPDAVVPSGRRRNLRAVNLGPDGTLRVAYHVDPSATGPARSMVYGLPPNQQTFVPHIVLPNQTVIRLASTPATTSG YALYALSLLDDEGGKDTAPDRARRAGVLSTWTDTQPARVRQVMTFDMKLIVSGLDVGRDGLLLVYATDPGQAIDDPPIPL MMSSTDAGRTWKQNADGIVYHNRYFDQDTNTLYSLLDERLKKLSFPIRHSPASQD >Mature_455_residues MRLSQAVSAETNDVRGTASNEIPLSTSANPMRHRSRLKGLAVIAIGGIVLNLFYESTGPHWKTVSSQITWSDPPAGVGDF YIAGNEIMSLTFADPVVTLKPAGEWKVPTVAEPTEAWMNSAGETLNRRTVNFFRGTLDHGLQRFLQAPGQHTAWWHSRDG QVHLISIGWLDYTSQHSEDDLVSRQTRVWKSLDGGRHWSQMAWPEHEDIDDLLFIDAQHGYAIGRGPTVRRTSDGGESWQ LIALPPDAVVPSGRRRNLRAVNLGPDGTLRVAYHVDPSATGPARSMVYGLPPNQQTFVPHIVLPNQTVIRLASTPATTSG YALYALSLLDDEGGKDTAPDRARRAGVLSTWTDTQPARVRQVMTFDMKLIVSGLDVGRDGLLLVYATDPGQAIDDPPIPL MMSSTDAGRTWKQNADGIVYHNRYFDQDTNTLYSLLDERLKKLSFPIRHSPASQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50221; Mature: 50221
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLSQAVSAETNDVRGTASNEIPLSTSANPMRHRSRLKGLAVIAIGGIVLNLFYESTGPH CCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEHHHHEEHHHHCCCCC WKTVSSQITWSDPPAGVGDFYIAGNEIMSLTFADPVVTLKPAGEWKVPTVAEPTEAWMNS EEECCCEEEECCCCCCCCCEEEECCEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHHHH AGETLNRRTVNFFRGTLDHGLQRFLQAPGQHTAWWHSRDGQVHLISIGWLDYTSQHSEDD HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEEECCCCCCCCHH LVSRQTRVWKSLDGGRHWSQMAWPEHEDIDDLLFIDAQHGYAIGRGPTVRRTSDGGESWQ HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEEECCCCEEECCCCCEEECCCCCCCEE LIALPPDAVVPSGRRRNLRAVNLGPDGTLRVAYHVDPSATGPARSMVYGLPPNQQTFVPH EEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHEEEECCCCCCEECCE IVLPNQTVIRLASTPATTSGYALYALSLLDDEGGKDTAPDRARRAGVLSTWTDTQPARVR EECCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHCCCEEECCCCCHHHHH QVMTFDMKLIVSGLDVGRDGLLLVYATDPGQAIDDPPIPLMMSSTDAGRTWKQNADGIVY HHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHCCCCEEEE HNRYFDQDTNTLYSLLDERLKKLSFPIRHSPASQD ECEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MRLSQAVSAETNDVRGTASNEIPLSTSANPMRHRSRLKGLAVIAIGGIVLNLFYESTGPH CCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEHHHHEEHHHHCCCCC WKTVSSQITWSDPPAGVGDFYIAGNEIMSLTFADPVVTLKPAGEWKVPTVAEPTEAWMNS EEECCCEEEECCCCCCCCCEEEECCEEEEEEECCCEEEEECCCCCCCCCCCCHHHHHHHH AGETLNRRTVNFFRGTLDHGLQRFLQAPGQHTAWWHSRDGQVHLISIGWLDYTSQHSEDD HCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEEECCCCCCCCHH LVSRQTRVWKSLDGGRHWSQMAWPEHEDIDDLLFIDAQHGYAIGRGPTVRRTSDGGESWQ HHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCEEEEECCCCEEECCCCCEEECCCCCCCEE LIALPPDAVVPSGRRRNLRAVNLGPDGTLRVAYHVDPSATGPARSMVYGLPPNQQTFVPH EEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCHHHEEEECCCCCCEECCE IVLPNQTVIRLASTPATTSGYALYALSLLDDEGGKDTAPDRARRAGVLSTWTDTQPARVR EECCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHCCCEEECCCCCHHHHH QVMTFDMKLIVSGLDVGRDGLLLVYATDPGQAIDDPPIPLMMSSTDAGRTWKQNADGIVY HHHHHHHHHEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHCCCCEEEE HNRYFDQDTNTLYSLLDERLKKLSFPIRHSPASQD ECEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA