Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352739

Identifier: 115352739

GI number: 115352739

Start: 2960907

End: 2962097

Strand: Direct

Name: 115352739

Synonym: Bamb_2688

Alternate gene names: NA

Gene position: 2960907-2962097 (Clockwise)

Preceding gene: 115352738

Following gene: 115352740

Centisome position: 83.25

GC content: 62.05

Gene sequence:

>1191_bases
GTGCTTGTTCTCCCGATCGCTATTTACGGATATACGGAAATGACATCAGGGTGGGACACGGTATCGACCGAATTCATGCG
CAACGACAAGCCGTACGGTGCGGGCGCATTTCGCGTGCAACGCAACGATTTCATGTCACTGAAGGTTGCGCGACCGGAAC
TCAAGTTCAAGCCGGAGAGCGAGCAGAAGAACCCTGACCTCGCGGAATTCACCGAAGCTTGGATGGACGATTCGAACCAG
CGGCTGAACCGGTCGACCGTCAGTTTCCTGCGCGGCACGCTGGACGGGAGCGCCGTGCGCCACTTCCAGCAACCGGGCCA
GACCGCGTCATGGTGGTACTCGCCTGACTGGCAGGTCCTGTACGTCAGTACGGGCTGGATGGATTACGCGGCGCCGCGCA
CCGTCGACGGTGCGTCCCCTCAGACAACCCGACTCTGGAAGTCGAGCGACGGTGGCCAGCACTGGGCCCAGCTCGAATGG
CCGATGGAGCGCAACATCAACCGCTTGCTGTTCATTGATGCGCAACGGGGCTACGCCATCGGATGGGGACCCCGCGTGTG
GCGAACGGCGGACGGCGGGCAATCGTGGCAGGAAATCAAGGAACCGCCGGGTGCCGCCCTTCAGGACAAGCCACGCCGGA
CTTTCGACGGGACCAACCTCGGTCCCGACGGTGTATTGCGCATTGCCTATCAGGTTGAAGACGCCGAGCATCCGCAACCG
GCAACGGTGGTCTGGCGGCTCGATTGGAATCAGCAGGATTTCATCCGGGAAGCGGTGCTCCCCGGACAAGTCATCGTCAG
CCTCGAATCGTCGCCGGCCCCCGTCCGGAATTACGCACTGTATGCGTTGTCGCGTACAAGCGGCGAATCCGGCAGCGGTC
ATGGTGCGGGCGTCATTTCGACCTGGACTAGCGAGCACCCCGAACACATCCAGGAACTGCATGCGTTTGACAGCCCGCTG
ACGCTCAACGGACTGAGCGCGGGTCGCAACGGCGTCCTGCTGGTCCACGCGACCGACCCGAACACCGCAAACGGCGGCGG
CGCACCGATCGACCTGACGATCAGCAGCACCGACGGTGGAAAGACATGGCAGCAGACCGCCGACAAGGCTTCACAGGGCG
GCTACTTCGATCCACAAACGAACACGCTCTATTCGGTGTTCGCCTATACGCTGCGGAAACGGCAATTCTGA

Upstream 100 bases:

>100_bases
GAGGAATCGGACGCCGACGATCCGGTCGGCAAGGCGCTCGGAAGGCTGCTGGCGAAGTGACATGCGAAAAGGCAAACGAT
GGCTTTGGGTCGCGGGATGC

Downstream 100 bases:

>100_bases
TCGGCGCCCGATGCGTTTGTCGCAGGCCGTGTCCGCGGAAACGAACGACGTCCGCGGCACGGCCAGCAACGAGATTCCTC
TATCGACTTCAGCCAATCCC

Product: BNR repeat-containing glycosyl hydrolase

Products: NA

Alternate protein names: Glycosyl Hydrolase

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MLVLPIAIYGYTEMTSGWDTVSTEFMRNDKPYGAGAFRVQRNDFMSLKVARPELKFKPESEQKNPDLAEFTEAWMDDSNQ
RLNRSTVSFLRGTLDGSAVRHFQQPGQTASWWYSPDWQVLYVSTGWMDYAAPRTVDGASPQTTRLWKSSDGGQHWAQLEW
PMERNINRLLFIDAQRGYAIGWGPRVWRTADGGQSWQEIKEPPGAALQDKPRRTFDGTNLGPDGVLRIAYQVEDAEHPQP
ATVVWRLDWNQQDFIREAVLPGQVIVSLESSPAPVRNYALYALSRTSGESGSGHGAGVISTWTSEHPEHIQELHAFDSPL
TLNGLSAGRNGVLLVHATDPNTANGGGAPIDLTISSTDGGKTWQQTADKASQGGYFDPQTNTLYSVFAYTLRKRQF

Sequences:

>Translated_396_residues
MLVLPIAIYGYTEMTSGWDTVSTEFMRNDKPYGAGAFRVQRNDFMSLKVARPELKFKPESEQKNPDLAEFTEAWMDDSNQ
RLNRSTVSFLRGTLDGSAVRHFQQPGQTASWWYSPDWQVLYVSTGWMDYAAPRTVDGASPQTTRLWKSSDGGQHWAQLEW
PMERNINRLLFIDAQRGYAIGWGPRVWRTADGGQSWQEIKEPPGAALQDKPRRTFDGTNLGPDGVLRIAYQVEDAEHPQP
ATVVWRLDWNQQDFIREAVLPGQVIVSLESSPAPVRNYALYALSRTSGESGSGHGAGVISTWTSEHPEHIQELHAFDSPL
TLNGLSAGRNGVLLVHATDPNTANGGGAPIDLTISSTDGGKTWQQTADKASQGGYFDPQTNTLYSVFAYTLRKRQF
>Mature_396_residues
MLVLPIAIYGYTEMTSGWDTVSTEFMRNDKPYGAGAFRVQRNDFMSLKVARPELKFKPESEQKNPDLAEFTEAWMDDSNQ
RLNRSTVSFLRGTLDGSAVRHFQQPGQTASWWYSPDWQVLYVSTGWMDYAAPRTVDGASPQTTRLWKSSDGGQHWAQLEW
PMERNINRLLFIDAQRGYAIGWGPRVWRTADGGQSWQEIKEPPGAALQDKPRRTFDGTNLGPDGVLRIAYQVEDAEHPQP
ATVVWRLDWNQQDFIREAVLPGQVIVSLESSPAPVRNYALYALSRTSGESGSGHGAGVISTWTSEHPEHIQELHAFDSPL
TLNGLSAGRNGVLLVHATDPNTANGGGAPIDLTISSTDGGKTWQQTADKASQGGYFDPQTNTLYSVFAYTLRKRQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44173; Mature: 44173

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLPIAIYGYTEMTSGWDTVSTEFMRNDKPYGAGAFRVQRNDFMSLKVARPELKFKPES
CEEEEEEEECCHHCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCC
EQKNPDLAEFTEAWMDDSNQRLNRSTVSFLRGTLDGSAVRHFQQPGQTASWWYSPDWQVL
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEECCCCEEE
YVSTGWMDYAAPRTVDGASPQTTRLWKSSDGGQHWAQLEWPMERNINRLLFIDAQRGYAI
EEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCHHCCCCEEEEEECCCCEEE
GWGPRVWRTADGGQSWQEIKEPPGAALQDKPRRTFDGTNLGPDGVLRIAYQVEDAEHPQP
ECCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
ATVVWRLDWNQQDFIREAVLPGQVIVSLESSPAPVRNYALYALSRTSGESGSGHGAGVIS
EEEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEE
TWTSEHPEHIQELHAFDSPLTLNGLSAGRNGVLLVHATDPNTANGGGAPIDLTISSTDGG
CCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCC
KTWQQTADKASQGGYFDPQTNTLYSVFAYTLRKRQF
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLVLPIAIYGYTEMTSGWDTVSTEFMRNDKPYGAGAFRVQRNDFMSLKVARPELKFKPES
CEEEEEEEECCHHCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCC
EQKNPDLAEFTEAWMDDSNQRLNRSTVSFLRGTLDGSAVRHFQQPGQTASWWYSPDWQVL
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEECCCCEEE
YVSTGWMDYAAPRTVDGASPQTTRLWKSSDGGQHWAQLEWPMERNINRLLFIDAQRGYAI
EEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCHHCCCCEEEEEECCCCEEE
GWGPRVWRTADGGQSWQEIKEPPGAALQDKPRRTFDGTNLGPDGVLRIAYQVEDAEHPQP
ECCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
ATVVWRLDWNQQDFIREAVLPGQVIVSLESSPAPVRNYALYALSRTSGESGSGHGAGVIS
EEEEEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEE
TWTSEHPEHIQELHAFDSPLTLNGLSAGRNGVLLVHATDPNTANGGGAPIDLTISSTDGG
CCCCCCHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCC
KTWQQTADKASQGGYFDPQTNTLYSVFAYTLRKRQF
CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA