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The map label for this gene is lsrR [H]

Identifier: 115352686

GI number: 115352686

Start: 2900651

End: 2901673

Strand: Direct

Name: lsrR [H]

Synonym: Bamb_2635

Alternate gene names: 115352686

Gene position: 2900651-2901673 (Clockwise)

Preceding gene: 115352685

Following gene: 115352689

Centisome position: 81.56

GC content: 69.99

Gene sequence:

>1023_bases
ATGCCGTCGGCGCCCCTGACGGCCGGCCCGCGGGGGCGGCCCCCAGATCCAAACCGAACCGCTATCGTGTCCAAGTCCTC
AGAAAAACTCGATCTCGCCACACGCGCCGCGTGGCTCTACTACGTCGCGGGCGACACGCAGAATGAAATCGCCGAGAAGC
TGCAGGTGTCGCGCCCGGTCGCGCAGCGCCTCGTCGCGTTCGCGGTCGAGAAGAACCTGATCCGCGTGCGCGTCGATCAC
CAGCTCGCCGACTGTCTCGATCTCGGCGCGCAACTGTCGAAACGCTACGGGCTCGCGATGTGCGAAGTCGTGCCGGTCGA
TGCCGACGCGCCCGAAGCGATCGACCGCAAGCTCGCGGTCGCCGGCGCGCAGGTGATGGAGCGCTACCTGAACGAAACGC
GGCCGATGGTGATCGCGGTCAGCAGCGGCCGCACGCTGAAGGCGGCGGTCGCGCAGATCGCGCAGATCGAGCGGCCGCAG
CACCGGCTCGTGTCGATGGTCGGCGCGATCGCGGCCGACGGCTCGTCGAACCGCTACGACGTCGCGCAGTACATCTCCGA
GAAGACGGGCGGCAAGCACTTCCTGCTGCCCGCGCCGCTGTTCGCCGACAGCGACGCCGAGCGCGCGCAATGGTGCAACC
ACCGTCTGTACCGGATCGTCGATGCGCTGTCGGCGCAGGCCGACGTCGCGTTCGTCGGGATCGGCAACATCGGCCCGCAT
TGCCCGCTCTACGAGGACGGCTTCATCACCGAACAGGAACGCGACGAGATGACCGCGCTCGGCGCGGTGGCCGAGCTGCT
CGGTGTGCCGATCGATGCGCGGGGCAGGCTGGTCGACGTGTCGACGAGCGCGCGCGTGACGAGCGTCGCGCTCGACGCGC
CGCCGAAACGTCCGACGATCGCGTTCGCGGGCGGCCCGAAGAAACGCGACGCGGTGATCGCCGCGCTGCGCGGCGGCTGG
CTGTCGGGGCTCGTCACCGACGAGACCTGCGCGCGCGCGGCACTCGAGGCGAAGGCGGCCTGA

Upstream 100 bases:

>100_bases
CTGTATCGCCACGTGCGCCCGCTTTACGAACCGTCGCGCGCGCGGCTCGCGTAAGCGCCGCAGCGGCCGTCGGCCGCGCG
CCCGGCATGCGTTACAGTGG

Downstream 100 bases:

>100_bases
CGCCGCGGAACGCTCACACGGCCGCGCGCGGCGCCGGAAACGCATGCCGGCGCGCGCGCCACGCGCCGACCCACGCCGCC
GCCAGCAGCGCGACGAGCAC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MPSAPLTAGPRGRPPDPNRTAIVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDH
QLADCLDLGAQLSKRYGLAMCEVVPVDADAPEAIDRKLAVAGAQVMERYLNETRPMVIAVSSGRTLKAAVAQIAQIERPQ
HRLVSMVGAIAADGSSNRYDVAQYISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVDALSAQADVAFVGIGNIGPH
CPLYEDGFITEQERDEMTALGAVAELLGVPIDARGRLVDVSTSARVTSVALDAPPKRPTIAFAGGPKKRDAVIAALRGGW
LSGLVTDETCARAALEAKAA

Sequences:

>Translated_340_residues
MPSAPLTAGPRGRPPDPNRTAIVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDH
QLADCLDLGAQLSKRYGLAMCEVVPVDADAPEAIDRKLAVAGAQVMERYLNETRPMVIAVSSGRTLKAAVAQIAQIERPQ
HRLVSMVGAIAADGSSNRYDVAQYISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVDALSAQADVAFVGIGNIGPH
CPLYEDGFITEQERDEMTALGAVAELLGVPIDARGRLVDVSTSARVTSVALDAPPKRPTIAFAGGPKKRDAVIAALRGGW
LSGLVTDETCARAALEAKAA
>Mature_339_residues
PSAPLTAGPRGRPPDPNRTAIVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAVEKNLIRVRVDHQ
LADCLDLGAQLSKRYGLAMCEVVPVDADAPEAIDRKLAVAGAQVMERYLNETRPMVIAVSSGRTLKAAVAQIAQIERPQH
RLVSMVGAIAADGSSNRYDVAQYISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVDALSAQADVAFVGIGNIGPHC
PLYEDGFITEQERDEMTALGAVAELLGVPIDARGRLVDVSTSARVTSVALDAPPKRPTIAFAGGPKKRDAVIAALRGGWL
SGLVTDETCARAALEAKAA

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=325, Percent_Identity=27.3846153846154, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87082414, Length=317, Percent_Identity=25.2365930599369, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36397; Mature: 36266

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSAPLTAGPRGRPPDPNRTAIVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPV
CCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHH
AQRLVAFAVEKNLIRVRVDHQLADCLDLGAQLSKRYGLAMCEVVPVDADAPEAIDRKLAV
HHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
AGAQVMERYLNETRPMVIAVSSGRTLKAAVAQIAQIERPQHRLVSMVGAIAADGSSNRYD
HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHH
VAQYISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVDALSAQADVAFVGIGNIGPH
HHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
CPLYEDGFITEQERDEMTALGAVAELLGVPIDARGRLVDVSTSARVTSVALDAPPKRPTI
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCCCCEE
AFAGGPKKRDAVIAALRGGWLSGLVTDETCARAALEAKAA
EECCCCCCHHHHHHHHHCCHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PSAPLTAGPRGRPPDPNRTAIVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPV
CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHH
AQRLVAFAVEKNLIRVRVDHQLADCLDLGAQLSKRYGLAMCEVVPVDADAPEAIDRKLAV
HHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHH
AGAQVMERYLNETRPMVIAVSSGRTLKAAVAQIAQIERPQHRLVSMVGAIAADGSSNRYD
HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHH
VAQYISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVDALSAQADVAFVGIGNIGPH
HHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
CPLYEDGFITEQERDEMTALGAVAELLGVPIDARGRLVDVSTSARVTSVALDAPPKRPTI
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEECCCCCCCEE
AFAGGPKKRDAVIAALRGGWLSGLVTDETCARAALEAKAA
EECCCCCCHHHHHHHHHCCHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA