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The map label for this gene is yafC [H]

Identifier: 115352689

GI number: 115352689

Start: 2904220

End: 2905104

Strand: Direct

Name: yafC [H]

Synonym: Bamb_2638

Alternate gene names: 115352689

Gene position: 2904220-2905104 (Clockwise)

Preceding gene: 115352686

Following gene: 115352698

Centisome position: 81.66

GC content: 68.93

Gene sequence:

>885_bases
ATGGAAAATCTTGGCGGCTTCGTCGTGTTCGTCCAGGTCGCGGAAACGCGCAGTTTCGTCGCGGCCGGCCGCGCGCTCGG
GCTGTCGGCGTCCGCGATCGGCAAGCGCATCGCGCGGCTCGAGGCCCGGCTGAACGTGCGGCTGTTTCACCGCAGCACGC
GCAGCATCACGCTGACCGCGGAAGGCACGCGTTTCCTGGAGCGATGCCGGCGCGTGATCGCCGAGATCGACGCGGCCGAG
CAGGAACTGACGCACAGCGCCGAAGCGCCGCGCGGGCGCCTGCGCGTGAGCCTGCCGACGATCGGCACGCTGCTGCTGCC
GCTGCTCGCCGATTTCATGGCAGCGTATCCGGAGATCGAACTCGACATCGATTTCAGCGACCGCCTGGTCGACGTCGTCG
AAGAAGGCTTCGACGCGGTGCTGCGCACCGGCCAGCCGACGGATTCGCGGCTGTCATCGCGGCTGCTCGGCCATTTTGGC
CAGCACCTCGTCGCGTCGCCCGACTATCTCGAACGGCACGGCACGCCGCGCACGCCGACCGATCTCGCACGGCACCGCTG
CCTGCACTACCGCTTCCCGAGCAGCGGCAAGCTCGAGATCTGGCCGCTGCGCGCGTCGCGCTCGGGCACGCCACCGGCGG
TGCCGGTCTCGATGGTCAGTAACAGCGCGGAGACGCGTCTGTGCTTCGCGCGGCGCGGGCTCGGCATCGCGTGCCTGCCC
GAATTCTTCGTGCGTGACGCGCTCGACGACGGCACGCTGCGTGCGGTACTCGCCGAACACATCGTGAGCCGCACGCCGTT
CTACGTGCTGTGGCCATCAGGCCGCCATCCGACGCCGAAGCTGCGTGCATTCGTCGACCACATGGCCGAGCACTTGCGCC
TGTAA

Upstream 100 bases:

>100_bases
ACAGTGAAGGAACGCCCATCGTAGGGAGCCGGCGCAAGAAGAAAAACCGGGTTAGAGTTCCGGACACTCCGGACATCGAT
GTCCGCAATCGGGAACCTGC

Downstream 100 bases:

>100_bases
CCGGCGCAAGCCGTTACGCCGCCTTCGCGTGCGCGCTCAGCCGCCGGAACGCCTGCCCCTGCTCGTCGAACAGGTGGCAA
TGCTCGGGCTGCGCATGCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MENLGGFVVFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLERCRRVIAEIDAAE
QELTHSAEAPRGRLRVSLPTIGTLLLPLLADFMAAYPEIELDIDFSDRLVDVVEEGFDAVLRTGQPTDSRLSSRLLGHFG
QHLVASPDYLERHGTPRTPTDLARHRCLHYRFPSSGKLEIWPLRASRSGTPPAVPVSMVSNSAETRLCFARRGLGIACLP
EFFVRDALDDGTLRAVLAEHIVSRTPFYVLWPSGRHPTPKLRAFVDHMAEHLRL

Sequences:

>Translated_294_residues
MENLGGFVVFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLERCRRVIAEIDAAE
QELTHSAEAPRGRLRVSLPTIGTLLLPLLADFMAAYPEIELDIDFSDRLVDVVEEGFDAVLRTGQPTDSRLSSRLLGHFG
QHLVASPDYLERHGTPRTPTDLARHRCLHYRFPSSGKLEIWPLRASRSGTPPAVPVSMVSNSAETRLCFARRGLGIACLP
EFFVRDALDDGTLRAVLAEHIVSRTPFYVLWPSGRHPTPKLRAFVDHMAEHLRL
>Mature_294_residues
MENLGGFVVFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLERCRRVIAEIDAAE
QELTHSAEAPRGRLRVSLPTIGTLLLPLLADFMAAYPEIELDIDFSDRLVDVVEEGFDAVLRTGQPTDSRLSSRLLGHFG
QHLVASPDYLERHGTPRTPTDLARHRCLHYRFPSSGKLEIWPLRASRSGTPPAVPVSMVSNSAETRLCFARRGLGIACLP
EFFVRDALDDGTLRAVLAEHIVSRTPFYVLWPSGRHPTPKLRAFVDHMAEHLRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=35.2739726027397, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=34.6020761245675, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=31.5254237288136, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=30.1694915254237, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI87081978, Length=262, Percent_Identity=35.1145038167939, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=29.7945205479452, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=29.0657439446367, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1789173, Length=286, Percent_Identity=26.9230769230769, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788706, Length=297, Percent_Identity=26.5993265993266, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790011, Length=250, Percent_Identity=24.8, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786448, Length=287, Percent_Identity=26.8292682926829, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=38.4615384615385, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=295, Percent_Identity=25.4237288135593, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=287, Percent_Identity=27.1777003484321, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693105, Length=122, Percent_Identity=33.6065573770492, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32707; Mature: 32707

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLGGFVVFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTA
CCCCCCEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEEE
EGTRFLERCRRVIAEIDAAEQELTHSAEAPRGRLRVSLPTIGTLLLPLLADFMAAYPEIE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEE
LDIDFSDRLVDVVEEGFDAVLRTGQPTDSRLSSRLLGHFGQHLVASPDYLERHGTPRTPT
EECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHH
DLARHRCLHYRFPSSGKLEIWPLRASRSGTPPAVPVSMVSNSAETRLCFARRGLGIACLP
HHHHHHHHEEECCCCCCEEEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHH
EFFVRDALDDGTLRAVLAEHIVSRTPFYVLWPSGRHPTPKLRAFVDHMAEHLRL
HHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MENLGGFVVFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTA
CCCCCCEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEEE
EGTRFLERCRRVIAEIDAAEQELTHSAEAPRGRLRVSLPTIGTLLLPLLADFMAAYPEIE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEE
LDIDFSDRLVDVVEEGFDAVLRTGQPTDSRLSSRLLGHFGQHLVASPDYLERHGTPRTPT
EECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHH
DLARHRCLHYRFPSSGKLEIWPLRASRSGTPPAVPVSMVSNSAETRLCFARRGLGIACLP
HHHHHHHHEEECCCCCCEEEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHH
EFFVRDALDDGTLRAVLAEHIVSRTPFYVLWPSGRHPTPKLRAFVDHMAEHLRL
HHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]