Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352463

Identifier: 115352463

GI number: 115352463

Start: 2660379

End: 2662031

Strand: Direct

Name: 115352463

Synonym: Bamb_2412

Alternate gene names: NA

Gene position: 2660379-2662031 (Clockwise)

Preceding gene: 115352462

Following gene: 115352464

Centisome position: 74.8

GC content: 59.77

Gene sequence:

>1653_bases
ATGACGACGGGTGTTGGCAAACAGCTCAAAGATTTCGGCCCGGCGGCGGCCGCATCGGATTCCGACATCTTCTTCTCGGC
GCAGTCCGGGGTTGAGAAGAAAATGACCGCTGTGCAGTTGGCGGCGTACATGCAGGCCAAGGTCATTCAGAACAAGAACG
TCGAGACGTTCATTTCGGGGAACGGGGTGACCCCCGGGACGTTCCTTCCTGGTGGATCCTCGATCACCCTTGCGAACAAT
TACGGGTCGATCAACAACATTGATGTCTTCGCCGACGGGGCGCCGCAGCTCGACTGTGCGCTAACCGGGAATGTGCTCGG
CTTTCCGAATGGAGGCATCCCGAACGTTTCGAAGATCACCGTCAAGGGCGCGCTGACGGTGCCTGTTGGTGCTATCGGCA
CCGGCGCAGTGGGTGATGCGCAGCTCGCAAACGGATCGCGCATCTTCTACATCAACAAGAACACGCAACTTACGCCGGAC
TACTACGAGTGCGTTGCGGATTGGAACGGTGTGACCGGGAGCGATAACACGCTGAATTTTCAGCGGCTCGTCAATGACAT
TGCTGCGATCGGGGGCGGCGAGATCGACCTCGGTAACAACGGCTTTTTCGCATTCAAGAATTTGATTGTCCCGGACGGAG
TGCGCATCTACGGCCGAGGTCGATATAGGTCCGGCCTGGTCACGACGAACGTGTCCGGCAGCGGCACCGCGAATGGCGGC
GTCATCCAGTTGGGCAATTCGTCGATGCTCCGAGGGCTTTCGCTAACGGCCGCGACACCTATGACCGGCGGCATCCTGGT
ACTCCTGCTCGGCAATCTGGCGGAGGTCAGCGATTACCAGATGACGAACTACTACACCGGCGTACAGGCCGGGAGCGCAG
CACTGGAGGTGATCAATGCCCGCGTGGCGGAGGGCAACATGTTCTCCCCCTCGCTGGTATCGGGCGGCAATGCAATCATC
GGCGCGAACTTCGGCAATCTCGTCGTAGAGGGTGTCGTCGGTAGCGGCCCAGCCAGTGGGCCGCAGCCGTATTCGGGCCT
TCGATTGCTGAATGGCGACACTGCCTTCGTCAAGGCGGTCAACATGACCCGCCATGGCGCGGGCCTGCTGATGAATCCCT
CCCCCGTCCAGAATTTGTATTCCTGCGTTTTCTCCGACAGCGATTTCGATAGTGCAGTCGGTCAATCGTCCGCGCAGATC
GCTCCGCTTGGCGGGGCAGTCTGGGGTGCCAAGTTCAACAACGTCTGGTTCGGACTGTCGACTCAGGACGGGCTGCTGAT
CTCTGGCGCCGGCGGAGGCACCGTCGACGGCGTAGGGCTCTCGAACTGTGAATTTCCCGGTAATGGCGGATGCGGCCTGA
ATGTCTCGGGAGCCAACGTTTCCAACGTGATCGTCAACGGCGGATGGGCTGCAGGGAATTCCCAGGACGGCTACCGCTTC
ACGAATGGAACGTCGAAGTTCCAGTTGAACGGTGTTACGGGAGGTCCCTGCTCGGGTCGCGGCCCCAACGGTGGCTATGG
ATGCCAGGTCGTGACCGGTGCCAGTAACGCATACGCGATCGCCAATAGCCTTTTCGCTGGCAACTCCACCGGATCGCTGC
TCGACAACGGAACAGGCAGTTCTAAGTCCGTCAACAACAACCTTCTTTCGTGA

Upstream 100 bases:

>100_bases
GACGTTCATGGAAGCGGGCACCCTTCCGGGCCTTTCGGCCGGCCAACCCCGCGGCGGGCGGCAGTACTTCACTTAACGTG
CCCTGAGATTTGGAGGTTCA

Downstream 100 bases:

>100_bases
CTCTCACCATGAAACGTCTCCTCATCGCGCTCATCGCTAGCGCAATCTCGATCGCGTCTGGCGCAGCGACGTACGTTCCA
GTCACTCTGCTGAATCCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MTTGVGKQLKDFGPAAAASDSDIFFSAQSGVEKKMTAVQLAAYMQAKVIQNKNVETFISGNGVTPGTFLPGGSSITLANN
YGSINNIDVFADGAPQLDCALTGNVLGFPNGGIPNVSKITVKGALTVPVGAIGTGAVGDAQLANGSRIFYINKNTQLTPD
YYECVADWNGVTGSDNTLNFQRLVNDIAAIGGGEIDLGNNGFFAFKNLIVPDGVRIYGRGRYRSGLVTTNVSGSGTANGG
VIQLGNSSMLRGLSLTAATPMTGGILVLLLGNLAEVSDYQMTNYYTGVQAGSAALEVINARVAEGNMFSPSLVSGGNAII
GANFGNLVVEGVVGSGPASGPQPYSGLRLLNGDTAFVKAVNMTRHGAGLLMNPSPVQNLYSCVFSDSDFDSAVGQSSAQI
APLGGAVWGAKFNNVWFGLSTQDGLLISGAGGGTVDGVGLSNCEFPGNGGCGLNVSGANVSNVIVNGGWAAGNSQDGYRF
TNGTSKFQLNGVTGGPCSGRGPNGGYGCQVVTGASNAYAIANSLFAGNSTGSLLDNGTGSSKSVNNNLLS

Sequences:

>Translated_550_residues
MTTGVGKQLKDFGPAAAASDSDIFFSAQSGVEKKMTAVQLAAYMQAKVIQNKNVETFISGNGVTPGTFLPGGSSITLANN
YGSINNIDVFADGAPQLDCALTGNVLGFPNGGIPNVSKITVKGALTVPVGAIGTGAVGDAQLANGSRIFYINKNTQLTPD
YYECVADWNGVTGSDNTLNFQRLVNDIAAIGGGEIDLGNNGFFAFKNLIVPDGVRIYGRGRYRSGLVTTNVSGSGTANGG
VIQLGNSSMLRGLSLTAATPMTGGILVLLLGNLAEVSDYQMTNYYTGVQAGSAALEVINARVAEGNMFSPSLVSGGNAII
GANFGNLVVEGVVGSGPASGPQPYSGLRLLNGDTAFVKAVNMTRHGAGLLMNPSPVQNLYSCVFSDSDFDSAVGQSSAQI
APLGGAVWGAKFNNVWFGLSTQDGLLISGAGGGTVDGVGLSNCEFPGNGGCGLNVSGANVSNVIVNGGWAAGNSQDGYRF
TNGTSKFQLNGVTGGPCSGRGPNGGYGCQVVTGASNAYAIANSLFAGNSTGSLLDNGTGSSKSVNNNLLS
>Mature_549_residues
TTGVGKQLKDFGPAAAASDSDIFFSAQSGVEKKMTAVQLAAYMQAKVIQNKNVETFISGNGVTPGTFLPGGSSITLANNY
GSINNIDVFADGAPQLDCALTGNVLGFPNGGIPNVSKITVKGALTVPVGAIGTGAVGDAQLANGSRIFYINKNTQLTPDY
YECVADWNGVTGSDNTLNFQRLVNDIAAIGGGEIDLGNNGFFAFKNLIVPDGVRIYGRGRYRSGLVTTNVSGSGTANGGV
IQLGNSSMLRGLSLTAATPMTGGILVLLLGNLAEVSDYQMTNYYTGVQAGSAALEVINARVAEGNMFSPSLVSGGNAIIG
ANFGNLVVEGVVGSGPASGPQPYSGLRLLNGDTAFVKAVNMTRHGAGLLMNPSPVQNLYSCVFSDSDFDSAVGQSSAQIA
PLGGAVWGAKFNNVWFGLSTQDGLLISGAGGGTVDGVGLSNCEFPGNGGCGLNVSGANVSNVIVNGGWAAGNSQDGYRFT
NGTSKFQLNGVTGGPCSGRGPNGGYGCQVVTGASNAYAIANSLFAGNSTGSLLDNGTGSSKSVNNNLLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55564; Mature: 55432

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGVGKQLKDFGPAAAASDSDIFFSAQSGVEKKMTAVQLAAYMQAKVIQNKNVETFISG
CCCCCCCHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
NGVTPGTFLPGGSSITLANNYGSINNIDVFADGAPQLDCALTGNVLGFPNGGIPNVSKIT
CCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEECCEEECCCCCCCCCEEEE
VKGALTVPVGAIGTGAVGDAQLANGSRIFYINKNTQLTPDYYECVADWNGVTGSDNTLNF
EEEEEEECCCCCCCCCCCCCEECCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCEEH
QRLVNDIAAIGGGEIDLGNNGFFAFKNLIVPDGVRIYGRGRYRSGLVTTNVSGSGTANGG
HHHHHHHHHCCCCEEEECCCCEEEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCC
VIQLGNSSMLRGLSLTAATPMTGGILVLLLGNLAEVSDYQMTNYYTGVQAGSAALEVINA
EEEECCCHHHCEEEEEECCCCCCCEEEEECCCCHHCCCEEEEEEECCCCCCHHHHHHHHH
RVAEGNMFSPSLVSGGNAIIGANFGNLVVEGVVGSGPASGPQPYSGLRLLNGDTAFVKAV
EECCCCCCCCHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEECCCEEEEEEE
NMTRHGAGLLMNPSPVQNLYSCVFSDSDFDSAVGQSSAQIAPLGGAVWGAKFNNVWFGLS
EEEECCCCEEECCHHHHHHHHHHCCCCCCHHHHCCCCCEEEECCCEEECCEECCEEEEEC
TQDGLLISGAGGGTVDGVGLSNCEFPGNGGCGLNVSGANVSNVIVNGGWAAGNSQDGYRF
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCEECCCCCCCEEE
TNGTSKFQLNGVTGGPCSGRGPNGGYGCQVVTGASNAYAIANSLFAGNSTGSLLDNGTGS
ECCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEHHHEECCCCCCCCEECCCCC
SKSVNNNLLS
CCCCCCCCCC
>Mature Secondary Structure 
TTGVGKQLKDFGPAAAASDSDIFFSAQSGVEKKMTAVQLAAYMQAKVIQNKNVETFISG
CCCCCCHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
NGVTPGTFLPGGSSITLANNYGSINNIDVFADGAPQLDCALTGNVLGFPNGGIPNVSKIT
CCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEECCEEECCCCCCCCCEEEE
VKGALTVPVGAIGTGAVGDAQLANGSRIFYINKNTQLTPDYYECVADWNGVTGSDNTLNF
EEEEEEECCCCCCCCCCCCCEECCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCEEH
QRLVNDIAAIGGGEIDLGNNGFFAFKNLIVPDGVRIYGRGRYRSGLVTTNVSGSGTANGG
HHHHHHHHHCCCCEEEECCCCEEEEEEEECCCCEEEEECCCCCCCEEEECCCCCCCCCCC
VIQLGNSSMLRGLSLTAATPMTGGILVLLLGNLAEVSDYQMTNYYTGVQAGSAALEVINA
EEEECCCHHHCEEEEEECCCCCCCEEEEECCCCHHCCCEEEEEEECCCCCCHHHHHHHHH
RVAEGNMFSPSLVSGGNAIIGANFGNLVVEGVVGSGPASGPQPYSGLRLLNGDTAFVKAV
EECCCCCCCCHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEECCCEEEEEEE
NMTRHGAGLLMNPSPVQNLYSCVFSDSDFDSAVGQSSAQIAPLGGAVWGAKFNNVWFGLS
EEEECCCCEEECCHHHHHHHHHHCCCCCCHHHHCCCCCEEEECCCEEECCEECCEEEEEC
TQDGLLISGAGGGTVDGVGLSNCEFPGNGGCGLNVSGANVSNVIVNGGWAAGNSQDGYRF
CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEECCEECCCCCCCEEE
TNGTSKFQLNGVTGGPCSGRGPNGGYGCQVVTGASNAYAIANSLFAGNSTGSLLDNGTGS
ECCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEHHHEECCCCCCCCEECCCCC
SKSVNNNLLS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA