| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352462
Identifier: 115352462
GI number: 115352462
Start: 2658677
End: 2660230
Strand: Direct
Name: 115352462
Synonym: Bamb_2411
Alternate gene names: NA
Gene position: 2658677-2660230 (Clockwise)
Preceding gene: 115352461
Following gene: 115352463
Centisome position: 74.75
GC content: 60.62
Gene sequence:
>1554_bases ATGGCGAGCAAAATTTCGATCGCGATTACCGCGAATAACCAGGCATCCGGCCCGATCGGGAAGGTCCAGAACAGTCTGGC AAAGCTCCAGGCGCAAGCAAGTAAGGGTGGTCTCAGCAATATCGGGCGCTCGATTTCGCTCGGGTTCTCCTCGAACAGTG GCGCGATCTCCGAGATCGCGAGCTTTGTCGGCAAGGCTGGAATCATCGGTGGCGTGACAGCGCTGACGATGAAAATTGCA CAGATGGAGTCGCAATGGGCGTCGTCGGTGCGCTCGATGAATAACCTCGGGATTCGAACTGGGTTGCCGACGACGACCGC CTACGGCGTGCAGTACGCCGGGCGCCTGGCTGGGTTGTCGCCCGAGCAGGCGAATTCAGGAATCGAGCAAGTTCGGCAGT CGTACAGTGACGCGCTCAACAACCGTAACCCGGAGGCGCTCAAGCGTTTCCAGGCGGCCGGCATCTCGACGAATCCGGCG CGTCTCGACTCCATCGAGACCGTGCTGACGAAGCTTGCGGCCTACTCGGAAACGCTGAGAAAGCAGGGCAAGTATGGAGG TGCGCAGAACTTCCTCAATGCTGCCGGAGCCGGGTCGCTGATCGATTTCCTGAATCGCGGGCCCAGGCAGGTTGCGGCAG ATCTGCAGGCTGCGAAAGCCTACGTTCCGACGGAGCAGGATATTCAGCGCGCCCGCGAATATGCGGACGCATCGGCAAAG CTGAGCATCACCTATGACCGTCTGAAGACGACGGTTCTGAGCGACCTCGAACCTGCTCTCAATTCGGTCCTCAACGGAAT TCAGTTTTTCTTCGATGCGTCGAGCGGCCGCGGTCGTCCGCAGGCGCAGCCGAACGGATCGGGTGGTACCGAACAGCGCA TCTGGGACGGGTTCGAGCGCTTCGGGAATTCGCTCCGCGGCCGTGGGCCGTACACGATGTCCCAGCTGAACACGAAGACA TCCGTCGGCAATGGTGCGCAGCTCGAGCAGGCGCGCTCGATAGTCGAGTGGTACATGAATCACGGAACCGACCGCGCATT TGCAATCGGCATGGCGGCGAATGCGTTCGGCGAAAGCCGCTTCAACGACCGCGAGACAAATGCAACTGGGCACGTCGGCT ATTTTCAGTGGAGTCGCGACCGGCAGCGAATCTACGAGCAGACATTCGGGAGACCGCTCGCTCTGGCGCGGCCCGAAGAG CAGATGAGGTACTCGCTCTGGGAAATGCAAAACACTGAATCGAGAGCCGGAAAGGCTCTTATGTCGACAAAGGACGCCGG CACCGCGGCAGCACTCATTTCGTCTCTGTATGAACGCCACGGCAATCCTGCGGAAGACGCTCATCGTGCGTCAATCGCTC GCGGGCTTGACGCTGAACTGGGACCGGCGGTCGGGGAGCCGGGGAAGGTGCGCATCGAGATCGTGCACAAGAACCCGCCC GCCGGCACGAGCGCGAACGTGACTTCGTCTCCGAACGTTGAGACGGAGATGAAGACCGACCGACAACAAGCGCCGCTTGG CGACCAGTACGCATATTCGCCGGGCAACTTCTAA
Upstream 100 bases:
>100_bases GGAACTTCAAATTCGATCTCTGCGATAACCGGAGTGAGTATGCAGGCAACTTCCACGAGCTCGACATGAGCCGCTACGAG TAACGCGGGGGCGGTTAACC
Downstream 100 bases:
>100_bases ACACATGCTCGCCCCAGCCGGCGGTGGGTAAAAACACCGGCAACTGCTGACGTTCATGGAAGCGGGCACCCTTCCGGGCC TTTCGGCCGGCCAACCCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 517; Mature: 516
Protein sequence:
>517_residues MASKISIAITANNQASGPIGKVQNSLAKLQAQASKGGLSNIGRSISLGFSSNSGAISEIASFVGKAGIIGGVTALTMKIA QMESQWASSVRSMNNLGIRTGLPTTTAYGVQYAGRLAGLSPEQANSGIEQVRQSYSDALNNRNPEALKRFQAAGISTNPA RLDSIETVLTKLAAYSETLRKQGKYGGAQNFLNAAGAGSLIDFLNRGPRQVAADLQAAKAYVPTEQDIQRAREYADASAK LSITYDRLKTTVLSDLEPALNSVLNGIQFFFDASSGRGRPQAQPNGSGGTEQRIWDGFERFGNSLRGRGPYTMSQLNTKT SVGNGAQLEQARSIVEWYMNHGTDRAFAIGMAANAFGESRFNDRETNATGHVGYFQWSRDRQRIYEQTFGRPLALARPEE QMRYSLWEMQNTESRAGKALMSTKDAGTAAALISSLYERHGNPAEDAHRASIARGLDAELGPAVGEPGKVRIEIVHKNPP AGTSANVTSSPNVETEMKTDRQQAPLGDQYAYSPGNF
Sequences:
>Translated_517_residues MASKISIAITANNQASGPIGKVQNSLAKLQAQASKGGLSNIGRSISLGFSSNSGAISEIASFVGKAGIIGGVTALTMKIA QMESQWASSVRSMNNLGIRTGLPTTTAYGVQYAGRLAGLSPEQANSGIEQVRQSYSDALNNRNPEALKRFQAAGISTNPA RLDSIETVLTKLAAYSETLRKQGKYGGAQNFLNAAGAGSLIDFLNRGPRQVAADLQAAKAYVPTEQDIQRAREYADASAK LSITYDRLKTTVLSDLEPALNSVLNGIQFFFDASSGRGRPQAQPNGSGGTEQRIWDGFERFGNSLRGRGPYTMSQLNTKT SVGNGAQLEQARSIVEWYMNHGTDRAFAIGMAANAFGESRFNDRETNATGHVGYFQWSRDRQRIYEQTFGRPLALARPEE QMRYSLWEMQNTESRAGKALMSTKDAGTAAALISSLYERHGNPAEDAHRASIARGLDAELGPAVGEPGKVRIEIVHKNPP AGTSANVTSSPNVETEMKTDRQQAPLGDQYAYSPGNF >Mature_516_residues ASKISIAITANNQASGPIGKVQNSLAKLQAQASKGGLSNIGRSISLGFSSNSGAISEIASFVGKAGIIGGVTALTMKIAQ MESQWASSVRSMNNLGIRTGLPTTTAYGVQYAGRLAGLSPEQANSGIEQVRQSYSDALNNRNPEALKRFQAAGISTNPAR LDSIETVLTKLAAYSETLRKQGKYGGAQNFLNAAGAGSLIDFLNRGPRQVAADLQAAKAYVPTEQDIQRAREYADASAKL SITYDRLKTTVLSDLEPALNSVLNGIQFFFDASSGRGRPQAQPNGSGGTEQRIWDGFERFGNSLRGRGPYTMSQLNTKTS VGNGAQLEQARSIVEWYMNHGTDRAFAIGMAANAFGESRFNDRETNATGHVGYFQWSRDRQRIYEQTFGRPLALARPEEQ MRYSLWEMQNTESRAGKALMSTKDAGTAAALISSLYERHGNPAEDAHRASIARGLDAELGPAVGEPGKVRIEIVHKNPPA GTSANVTSSPNVETEMKTDRQQAPLGDQYAYSPGNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55462; Mature: 55331
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: PS00041 HTH_ARAC_FAMILY_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASKISIAITANNQASGPIGKVQNSLAKLQAQASKGGLSNIGRSISLGFSSNSGAISEIA CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEECCCCCCCHHHHHH SFVGKAGIIGGVTALTMKIAQMESQWASSVRSMNNLGIRTGLPTTTAYGVQYAGRLAGLS HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC PEQANSGIEQVRQSYSDALNNRNPEALKRFQAAGISTNPARLDSIETVLTKLAAYSETLR HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH KQGKYGGAQNFLNAAGAGSLIDFLNRGPRQVAADLQAAKAYVPTEQDIQRAREYADASAK HHCCCCCHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCE LSITYDRLKTTVLSDLEPALNSVLNGIQFFFDASSGRGRPQAQPNGSGGTEQRIWDGFER EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH FGNSLRGRGPYTMSQLNTKTSVGNGAQLEQARSIVEWYMNHGTDRAFAIGMAANAFGESR HHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCC FNDRETNATGHVGYFQWSRDRQRIYEQTFGRPLALARPEEQMRYSLWEMQNTESRAGKAL CCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHH MSTKDAGTAAALISSLYERHGNPAEDAHRASIARGLDAELGPAVGEPGKVRIEIVHKNPP HHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCC AGTSANVTSSPNVETEMKTDRQQAPLGDQYAYSPGNF CCCCCCCCCCCCCCHHHHHCHHHCCCCCCCCCCCCCC >Mature Secondary Structure ASKISIAITANNQASGPIGKVQNSLAKLQAQASKGGLSNIGRSISLGFSSNSGAISEIA CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEECCCCCCCHHHHHH SFVGKAGIIGGVTALTMKIAQMESQWASSVRSMNNLGIRTGLPTTTAYGVQYAGRLAGLS HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC PEQANSGIEQVRQSYSDALNNRNPEALKRFQAAGISTNPARLDSIETVLTKLAAYSETLR HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH KQGKYGGAQNFLNAAGAGSLIDFLNRGPRQVAADLQAAKAYVPTEQDIQRAREYADASAK HHCCCCCHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCE LSITYDRLKTTVLSDLEPALNSVLNGIQFFFDASSGRGRPQAQPNGSGGTEQRIWDGFER EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH FGNSLRGRGPYTMSQLNTKTSVGNGAQLEQARSIVEWYMNHGTDRAFAIGMAANAFGESR HHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCC FNDRETNATGHVGYFQWSRDRQRIYEQTFGRPLALARPEEQMRYSLWEMQNTESRAGKAL CCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHH MSTKDAGTAAALISSLYERHGNPAEDAHRASIARGLDAELGPAVGEPGKVRIEIVHKNPP HHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCC AGTSANVTSSPNVETEMKTDRQQAPLGDQYAYSPGNF CCCCCCCCCCCCCCHHHHHCHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA