Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352462

Identifier: 115352462

GI number: 115352462

Start: 2658677

End: 2660230

Strand: Direct

Name: 115352462

Synonym: Bamb_2411

Alternate gene names: NA

Gene position: 2658677-2660230 (Clockwise)

Preceding gene: 115352461

Following gene: 115352463

Centisome position: 74.75

GC content: 60.62

Gene sequence:

>1554_bases
ATGGCGAGCAAAATTTCGATCGCGATTACCGCGAATAACCAGGCATCCGGCCCGATCGGGAAGGTCCAGAACAGTCTGGC
AAAGCTCCAGGCGCAAGCAAGTAAGGGTGGTCTCAGCAATATCGGGCGCTCGATTTCGCTCGGGTTCTCCTCGAACAGTG
GCGCGATCTCCGAGATCGCGAGCTTTGTCGGCAAGGCTGGAATCATCGGTGGCGTGACAGCGCTGACGATGAAAATTGCA
CAGATGGAGTCGCAATGGGCGTCGTCGGTGCGCTCGATGAATAACCTCGGGATTCGAACTGGGTTGCCGACGACGACCGC
CTACGGCGTGCAGTACGCCGGGCGCCTGGCTGGGTTGTCGCCCGAGCAGGCGAATTCAGGAATCGAGCAAGTTCGGCAGT
CGTACAGTGACGCGCTCAACAACCGTAACCCGGAGGCGCTCAAGCGTTTCCAGGCGGCCGGCATCTCGACGAATCCGGCG
CGTCTCGACTCCATCGAGACCGTGCTGACGAAGCTTGCGGCCTACTCGGAAACGCTGAGAAAGCAGGGCAAGTATGGAGG
TGCGCAGAACTTCCTCAATGCTGCCGGAGCCGGGTCGCTGATCGATTTCCTGAATCGCGGGCCCAGGCAGGTTGCGGCAG
ATCTGCAGGCTGCGAAAGCCTACGTTCCGACGGAGCAGGATATTCAGCGCGCCCGCGAATATGCGGACGCATCGGCAAAG
CTGAGCATCACCTATGACCGTCTGAAGACGACGGTTCTGAGCGACCTCGAACCTGCTCTCAATTCGGTCCTCAACGGAAT
TCAGTTTTTCTTCGATGCGTCGAGCGGCCGCGGTCGTCCGCAGGCGCAGCCGAACGGATCGGGTGGTACCGAACAGCGCA
TCTGGGACGGGTTCGAGCGCTTCGGGAATTCGCTCCGCGGCCGTGGGCCGTACACGATGTCCCAGCTGAACACGAAGACA
TCCGTCGGCAATGGTGCGCAGCTCGAGCAGGCGCGCTCGATAGTCGAGTGGTACATGAATCACGGAACCGACCGCGCATT
TGCAATCGGCATGGCGGCGAATGCGTTCGGCGAAAGCCGCTTCAACGACCGCGAGACAAATGCAACTGGGCACGTCGGCT
ATTTTCAGTGGAGTCGCGACCGGCAGCGAATCTACGAGCAGACATTCGGGAGACCGCTCGCTCTGGCGCGGCCCGAAGAG
CAGATGAGGTACTCGCTCTGGGAAATGCAAAACACTGAATCGAGAGCCGGAAAGGCTCTTATGTCGACAAAGGACGCCGG
CACCGCGGCAGCACTCATTTCGTCTCTGTATGAACGCCACGGCAATCCTGCGGAAGACGCTCATCGTGCGTCAATCGCTC
GCGGGCTTGACGCTGAACTGGGACCGGCGGTCGGGGAGCCGGGGAAGGTGCGCATCGAGATCGTGCACAAGAACCCGCCC
GCCGGCACGAGCGCGAACGTGACTTCGTCTCCGAACGTTGAGACGGAGATGAAGACCGACCGACAACAAGCGCCGCTTGG
CGACCAGTACGCATATTCGCCGGGCAACTTCTAA

Upstream 100 bases:

>100_bases
GGAACTTCAAATTCGATCTCTGCGATAACCGGAGTGAGTATGCAGGCAACTTCCACGAGCTCGACATGAGCCGCTACGAG
TAACGCGGGGGCGGTTAACC

Downstream 100 bases:

>100_bases
ACACATGCTCGCCCCAGCCGGCGGTGGGTAAAAACACCGGCAACTGCTGACGTTCATGGAAGCGGGCACCCTTCCGGGCC
TTTCGGCCGGCCAACCCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MASKISIAITANNQASGPIGKVQNSLAKLQAQASKGGLSNIGRSISLGFSSNSGAISEIASFVGKAGIIGGVTALTMKIA
QMESQWASSVRSMNNLGIRTGLPTTTAYGVQYAGRLAGLSPEQANSGIEQVRQSYSDALNNRNPEALKRFQAAGISTNPA
RLDSIETVLTKLAAYSETLRKQGKYGGAQNFLNAAGAGSLIDFLNRGPRQVAADLQAAKAYVPTEQDIQRAREYADASAK
LSITYDRLKTTVLSDLEPALNSVLNGIQFFFDASSGRGRPQAQPNGSGGTEQRIWDGFERFGNSLRGRGPYTMSQLNTKT
SVGNGAQLEQARSIVEWYMNHGTDRAFAIGMAANAFGESRFNDRETNATGHVGYFQWSRDRQRIYEQTFGRPLALARPEE
QMRYSLWEMQNTESRAGKALMSTKDAGTAAALISSLYERHGNPAEDAHRASIARGLDAELGPAVGEPGKVRIEIVHKNPP
AGTSANVTSSPNVETEMKTDRQQAPLGDQYAYSPGNF

Sequences:

>Translated_517_residues
MASKISIAITANNQASGPIGKVQNSLAKLQAQASKGGLSNIGRSISLGFSSNSGAISEIASFVGKAGIIGGVTALTMKIA
QMESQWASSVRSMNNLGIRTGLPTTTAYGVQYAGRLAGLSPEQANSGIEQVRQSYSDALNNRNPEALKRFQAAGISTNPA
RLDSIETVLTKLAAYSETLRKQGKYGGAQNFLNAAGAGSLIDFLNRGPRQVAADLQAAKAYVPTEQDIQRAREYADASAK
LSITYDRLKTTVLSDLEPALNSVLNGIQFFFDASSGRGRPQAQPNGSGGTEQRIWDGFERFGNSLRGRGPYTMSQLNTKT
SVGNGAQLEQARSIVEWYMNHGTDRAFAIGMAANAFGESRFNDRETNATGHVGYFQWSRDRQRIYEQTFGRPLALARPEE
QMRYSLWEMQNTESRAGKALMSTKDAGTAAALISSLYERHGNPAEDAHRASIARGLDAELGPAVGEPGKVRIEIVHKNPP
AGTSANVTSSPNVETEMKTDRQQAPLGDQYAYSPGNF
>Mature_516_residues
ASKISIAITANNQASGPIGKVQNSLAKLQAQASKGGLSNIGRSISLGFSSNSGAISEIASFVGKAGIIGGVTALTMKIAQ
MESQWASSVRSMNNLGIRTGLPTTTAYGVQYAGRLAGLSPEQANSGIEQVRQSYSDALNNRNPEALKRFQAAGISTNPAR
LDSIETVLTKLAAYSETLRKQGKYGGAQNFLNAAGAGSLIDFLNRGPRQVAADLQAAKAYVPTEQDIQRAREYADASAKL
SITYDRLKTTVLSDLEPALNSVLNGIQFFFDASSGRGRPQAQPNGSGGTEQRIWDGFERFGNSLRGRGPYTMSQLNTKTS
VGNGAQLEQARSIVEWYMNHGTDRAFAIGMAANAFGESRFNDRETNATGHVGYFQWSRDRQRIYEQTFGRPLALARPEEQ
MRYSLWEMQNTESRAGKALMSTKDAGTAAALISSLYERHGNPAEDAHRASIARGLDAELGPAVGEPGKVRIEIVHKNPPA
GTSANVTSSPNVETEMKTDRQQAPLGDQYAYSPGNF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55462; Mature: 55331

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKISIAITANNQASGPIGKVQNSLAKLQAQASKGGLSNIGRSISLGFSSNSGAISEIA
CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEECCCCCCCHHHHHH
SFVGKAGIIGGVTALTMKIAQMESQWASSVRSMNNLGIRTGLPTTTAYGVQYAGRLAGLS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
PEQANSGIEQVRQSYSDALNNRNPEALKRFQAAGISTNPARLDSIETVLTKLAAYSETLR
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
KQGKYGGAQNFLNAAGAGSLIDFLNRGPRQVAADLQAAKAYVPTEQDIQRAREYADASAK
HHCCCCCHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCE
LSITYDRLKTTVLSDLEPALNSVLNGIQFFFDASSGRGRPQAQPNGSGGTEQRIWDGFER
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
FGNSLRGRGPYTMSQLNTKTSVGNGAQLEQARSIVEWYMNHGTDRAFAIGMAANAFGESR
HHHHCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCC
FNDRETNATGHVGYFQWSRDRQRIYEQTFGRPLALARPEEQMRYSLWEMQNTESRAGKAL
CCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHH
MSTKDAGTAAALISSLYERHGNPAEDAHRASIARGLDAELGPAVGEPGKVRIEIVHKNPP
HHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCC
AGTSANVTSSPNVETEMKTDRQQAPLGDQYAYSPGNF
CCCCCCCCCCCCCCHHHHHCHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASKISIAITANNQASGPIGKVQNSLAKLQAQASKGGLSNIGRSISLGFSSNSGAISEIA
CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEECCCCCCCHHHHHH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CCCCCCCCCCCCCCHHHHHCHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA