| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352461
Identifier: 115352461
GI number: 115352461
Start: 2657604
End: 2658557
Strand: Direct
Name: 115352461
Synonym: Bamb_2410
Alternate gene names: NA
Gene position: 2657604-2658557 (Clockwise)
Preceding gene: 115352460
Following gene: 115352462
Centisome position: 74.72
GC content: 59.01
Gene sequence:
>954_bases ATGGCACGCACCCAACAGCTCACCGCCGCAGTTCAGGCAAAGCCCAATTTGACCATCGACGCAGAGACGATCAGCAATCT GCGCGAACTGCTCGATCAGCGTAAAAAACTCGATGATGCCGTCAACGCAGCTCCGGCGGAAATCAGCTCGCTCGAGGCCG AACTCTCGAGCCTTCGCCAACAAATGGGCGCTCTCGAAGCCGATGTCGTTTTCATCGATGAAACGCAGCTGCCCGCCAAG CAGAAGCAAATCAAGGCGCTGAACGAAGTTCTCGCGGAGAAGGAGCTCGCCGTCCGTCGTAAGAAGGTGCTCCTCGAAAC ACTTGAGGCCCGTGCGCCGGACCTCGACGAAAAAATCGAAATTGCAATTGGCTTCGTCCGAGTCGAGGCCGGTATCGCAT CGCAGTCGCTGCGATCCGACATCGCCGAAGAACTGCGCGGCAAAGTCCATGAGCTGCAACAGATCTACGCGAAAGTTCGG GCACTGAACGGCCTTGTGCGGAACGATCGCACGGCGGATTTCCTGCTGAGTGCGCTTGTTCCCGATCTCGATCACTGCAT GCGCGTCATCACGCAGACCGGGACATACGAGCAATCAACCAATCTGTTGGAAATCAGAACCGACGACACCGCGGCGGCCG AGGCGGAGATCTCCGAAGTAATGCGACCAATCACAGAAGTGTTGGCGCTCGCGCGGAATCATCGTCCGTATGTGCCGCTC GCTAAACGCCCGGCTCCGTATGTCCGCAAGGGGGCATGGGATGGCCCTGGAGGTCGCGTCGATCGCCCGGAGGAACCCGA GGAACCGCCGGTGCGTATGAAAACGATCGACGAGGCCCTCGCCGAGCCGTACGAAATCAAGGGCGATTCCAGCGGCTTCC GGACGTGGAAGCAAGCTCAAGAAATGAACATGACTGCGGCGATCACCGACGCGCAGCAGTCTGCCGAGCAGTAA
Upstream 100 bases:
>100_bases CATACGGTCACCGTACGGTCGCACTGGCTGACTACCGTAGCTAAAGTGCTCTCGACATCTCGCGCCCGCATCGCGCTGGC GCCCAGACCGAGAGGACTCT
Downstream 100 bases:
>100_bases GGATCAAGCAATGAACAGGGGAACTTCAAATTCGATCTCTGCGATAACCGGAGTGAGTATGCAGGCAACTTCCACGAGCT CGACATGAGCCGCTACGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MARTQQLTAAVQAKPNLTIDAETISNLRELLDQRKKLDDAVNAAPAEISSLEAELSSLRQQMGALEADVVFIDETQLPAK QKQIKALNEVLAEKELAVRRKKVLLETLEARAPDLDEKIEIAIGFVRVEAGIASQSLRSDIAEELRGKVHELQQIYAKVR ALNGLVRNDRTADFLLSALVPDLDHCMRVITQTGTYEQSTNLLEIRTDDTAAAEAEISEVMRPITEVLALARNHRPYVPL AKRPAPYVRKGAWDGPGGRVDRPEEPEEPPVRMKTIDEALAEPYEIKGDSSGFRTWKQAQEMNMTAAITDAQQSAEQ
Sequences:
>Translated_317_residues MARTQQLTAAVQAKPNLTIDAETISNLRELLDQRKKLDDAVNAAPAEISSLEAELSSLRQQMGALEADVVFIDETQLPAK QKQIKALNEVLAEKELAVRRKKVLLETLEARAPDLDEKIEIAIGFVRVEAGIASQSLRSDIAEELRGKVHELQQIYAKVR ALNGLVRNDRTADFLLSALVPDLDHCMRVITQTGTYEQSTNLLEIRTDDTAAAEAEISEVMRPITEVLALARNHRPYVPL AKRPAPYVRKGAWDGPGGRVDRPEEPEEPPVRMKTIDEALAEPYEIKGDSSGFRTWKQAQEMNMTAAITDAQQSAEQ >Mature_316_residues ARTQQLTAAVQAKPNLTIDAETISNLRELLDQRKKLDDAVNAAPAEISSLEAELSSLRQQMGALEADVVFIDETQLPAKQ KQIKALNEVLAEKELAVRRKKVLLETLEARAPDLDEKIEIAIGFVRVEAGIASQSLRSDIAEELRGKVHELQQIYAKVRA LNGLVRNDRTADFLLSALVPDLDHCMRVITQTGTYEQSTNLLEIRTDDTAAAEAEISEVMRPITEVLALARNHRPYVPLA KRPAPYVRKGAWDGPGGRVDRPEEPEEPPVRMKTIDEALAEPYEIKGDSSGFRTWKQAQEMNMTAAITDAQQSAEQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35196; Mature: 35065
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTQQLTAAVQAKPNLTIDAETISNLRELLDQRKKLDDAVNAAPAEISSLEAELSSLRQ CCCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QMGALEADVVFIDETQLPAKQKQIKALNEVLAEKELAVRRKKVLLETLEARAPDLDEKIE HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH IAIGFVRVEAGIASQSLRSDIAEELRGKVHELQQIYAKVRALNGLVRNDRTADFLLSALV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC PDLDHCMRVITQTGTYEQSTNLLEIRTDDTAAAEAEISEVMRPITEVLALARNHRPYVPL CCHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC AKRPAPYVRKGAWDGPGGRVDRPEEPEEPPVRMKTIDEALAEPYEIKGDSSGFRTWKQAQ CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH EMNMTAAITDAQQSAEQ HCCCHHEEHHHHHHCCC >Mature Secondary Structure ARTQQLTAAVQAKPNLTIDAETISNLRELLDQRKKLDDAVNAAPAEISSLEAELSSLRQ CCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QMGALEADVVFIDETQLPAKQKQIKALNEVLAEKELAVRRKKVLLETLEARAPDLDEKIE HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH IAIGFVRVEAGIASQSLRSDIAEELRGKVHELQQIYAKVRALNGLVRNDRTADFLLSALV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC PDLDHCMRVITQTGTYEQSTNLLEIRTDDTAAAEAEISEVMRPITEVLALARNHRPYVPL CCHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC AKRPAPYVRKGAWDGPGGRVDRPEEPEEPPVRMKTIDEALAEPYEIKGDSSGFRTWKQAQ CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH EMNMTAAITDAQQSAEQ HCCCHHEEHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA