Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115352460

Identifier: 115352460

GI number: 115352460

Start: 2656758

End: 2657462

Strand: Direct

Name: 115352460

Synonym: Bamb_2409

Alternate gene names: NA

Gene position: 2656758-2657462 (Clockwise)

Preceding gene: 115352459

Following gene: 115352461

Centisome position: 74.7

GC content: 58.16

Gene sequence:

>705_bases
ATGATCTTTGAGGAGCACATGAACTTCTACAAGCTCAAGGAGGCCGCCACGGCAATCGCTGCGGTGCTCTACCCTGCAAA
CTCTGGCGAAGAGAGCGAAGGTCCACGGCAAGATGCGGAGCGCAGCTATCTCGCTGCGCTTCAGCACGCTGTCTGCGAAG
ACGAAATCGTCTATCGGGATCCGGGTAGCAAGCTGCCTATTCATCAAGACGGCATTGCGGCTTTCATGACCTCTCACTGG
TGCGTCGTCAGCGTTGCAGATCTCAACGCATGGCTGCAGGCGAAAGGCATCGGCGTTCAGGTGCCATCCGTCTCGAGCGA
TTCCGACCACATGGATGAATCTGCCGACACGACCCAAGAGGCGGGCGTGGTAGAGCCCGACTGGCCGACGAGCGCTCAAT
TAGCGGATGCCCTCGGGCCCTATCTGGTTGATGGTCGCGACGGCGAATGGCTGAAGCGACGGTTAAATGATGCGGATCGA
TATGCCGATCTTCTGAAGTACAGGCGGAAAGAAGGAAGAAGGCCTGTCGCCAGATGGAACGCCGGCGGTGTGACCGTCTA
CCTGATCGCGTTGAAAGAGTTGACCTGGAAGGGCGCGAAAGCTGCGCTAGAGAAGCACTATCCAGATTCGCTGGGCGTGC
TCGACGGTCTTGGGCAGCGTGAGGAGAAGGCGCCAGCCCAATGGTTTCCCACTACGCACGATTAA

Upstream 100 bases:

>100_bases
ATGGTTGCTCACGGGCTTTTGACGGCGTACCACGTGCAGCGCAAGCGGAAGGCAGTTCATCCACCAACGTCGGACGGGCA
CGCGGCGGCCGGCACGGACG

Downstream 100 bases:

>100_bases
CCGCCGCATTCGCTCATCCCCGCATTACATCCTGCGGTGACCATACGGTCACCGTACGGTCGCACTGGCTGACTACCGTA
GCTAAAGTGCTCTCGACATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MIFEEHMNFYKLKEAATAIAAVLYPANSGEESEGPRQDAERSYLAALQHAVCEDEIVYRDPGSKLPIHQDGIAAFMTSHW
CVVSVADLNAWLQAKGIGVQVPSVSSDSDHMDESADTTQEAGVVEPDWPTSAQLADALGPYLVDGRDGEWLKRRLNDADR
YADLLKYRRKEGRRPVARWNAGGVTVYLIALKELTWKGAKAALEKHYPDSLGVLDGLGQREEKAPAQWFPTTHD

Sequences:

>Translated_234_residues
MIFEEHMNFYKLKEAATAIAAVLYPANSGEESEGPRQDAERSYLAALQHAVCEDEIVYRDPGSKLPIHQDGIAAFMTSHW
CVVSVADLNAWLQAKGIGVQVPSVSSDSDHMDESADTTQEAGVVEPDWPTSAQLADALGPYLVDGRDGEWLKRRLNDADR
YADLLKYRRKEGRRPVARWNAGGVTVYLIALKELTWKGAKAALEKHYPDSLGVLDGLGQREEKAPAQWFPTTHD
>Mature_234_residues
MIFEEHMNFYKLKEAATAIAAVLYPANSGEESEGPRQDAERSYLAALQHAVCEDEIVYRDPGSKLPIHQDGIAAFMTSHW
CVVSVADLNAWLQAKGIGVQVPSVSSDSDHMDESADTTQEAGVVEPDWPTSAQLADALGPYLVDGRDGEWLKRRLNDADR
YADLLKYRRKEGRRPVARWNAGGVTVYLIALKELTWKGAKAALEKHYPDSLGVLDGLGQREEKAPAQWFPTTHD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25937; Mature: 25937

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFEEHMNFYKLKEAATAIAAVLYPANSGEESEGPRQDAERSYLAALQHAVCEDEIVYRD
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
PGSKLPIHQDGIAAFMTSHWCVVSVADLNAWLQAKGIGVQVPSVSSDSDHMDESADTTQE
CCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHCCCEEECCCCCCCCHHCCCCCCCHHH
AGVVEPDWPTSAQLADALGPYLVDGRDGEWLKRRLNDADRYADLLKYRRKEGRRPVARWN
CCCCCCCCCCHHHHHHHCCCEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCEEC
AGGVTVYLIALKELTWKGAKAALEKHYPDSLGVLDGLGQREEKAPAQWFPTTHD
CCCEEEEEEEHHHHHCCHHHHHHHHCCCCHHHHHHCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIFEEHMNFYKLKEAATAIAAVLYPANSGEESEGPRQDAERSYLAALQHAVCEDEIVYRD
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEC
PGSKLPIHQDGIAAFMTSHWCVVSVADLNAWLQAKGIGVQVPSVSSDSDHMDESADTTQE
CCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHCCCEEECCCCCCCCHHCCCCCCCHHH
AGVVEPDWPTSAQLADALGPYLVDGRDGEWLKRRLNDADRYADLLKYRRKEGRRPVARWN
CCCCCCCCCCHHHHHHHCCCEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCEEC
AGGVTVYLIALKELTWKGAKAALEKHYPDSLGVLDGLGQREEKAPAQWFPTTHD
CCCEEEEEEEHHHHHCCHHHHHHHHCCCCHHHHHHCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA