| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352238
Identifier: 115352238
GI number: 115352238
Start: 2408149
End: 2408697
Strand: Direct
Name: 115352238
Synonym: Bamb_2187
Alternate gene names: NA
Gene position: 2408149-2408697 (Clockwise)
Preceding gene: 115352233
Following gene: 115352244
Centisome position: 67.71
GC content: 68.31
Gene sequence:
>549_bases ATGCGGGGCAGGCTACGCGCACATCGGCGCGGCGGCGGCGCGCTAGAATGTTCGTTTGACCGAACCATACGGAGACCTCC TGCCATGAGTACGCTCGATCAGCTTTACGCGAAGGCCGAAGAACGCCGCACCCAAGGCGCGCTCAACTATGCCGGCGCGC TGCTGCCGGTCGAGGCATTCGAACTGCTGCAGCTCGACCCGTCGGCGCGCCTTGTCGACGTGCGCACCCGCGCCGAGCTC GACTGGGTCGGCCGCCCGCTCGTCGGCGACGGCCAGTACCTGCACGTCGAATGGACGCGCTATCCGGGCGGCGTACCGAA CGCCGAATTCGTCAACGAACTGAAGGCAGCCCTCCCGGCCGATACGCCCATCCTGTTCCTGTGCCGCAGCGCCGCGCGCT CGAAGCTCGCCGCGGTCGCGTCGGCGCACGCCGGCTTCACGAAGGCGTTCGACCTGCTCGAAGGCTTCGAAGGCGGCAAG GACGGCGAAGGCCACCGCAAGACGGTCGACGGCTGGTGCTTCCGGAAACTGCCGTGGATCGGCGCCTGA
Upstream 100 bases:
>100_bases CGCACTGAAATGGTGCAATCTCCGGAGGGCCCATGCGCGGCTGAATCATTGTGGTGCATGCGTACCATTCTGCACTCTTT TGGTGAGCACGGGGCGGTGC
Downstream 100 bases:
>100_bases GCGCGCATCCGTTCAGGCACGCCCGACTGCCACATCGTCGAGCCGGGCGATGACATCCCGATGACGGGCCGCGTTGCGCG GCCCGTGGTTTTTGCGCGGC
Product: rhodanese domain-containing protein
Products: NA
Alternate protein names: Rhodanese Domain Protein; Rhodanese-Like Protein; Rhodanese-Related Sulfurtransferase; Sulfide Dehydrogenase; Rhodanese-Like Domain Protein; Sulfurtransferase Protein; Rhodanese/Cdc25 Fold; Rhodanese-Like Domain-Containing Protein; Sulfate Permease Andrelated Transporter; Rhodanese-Like Sulfurtransferase
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MRGRLRAHRRGGGALECSFDRTIRRPPAMSTLDQLYAKAEERRTQGALNYAGALLPVEAFELLQLDPSARLVDVRTRAEL DWVGRPLVGDGQYLHVEWTRYPGGVPNAEFVNELKAALPADTPILFLCRSAARSKLAAVASAHAGFTKAFDLLEGFEGGK DGEGHRKTVDGWCFRKLPWIGA
Sequences:
>Translated_182_residues MRGRLRAHRRGGGALECSFDRTIRRPPAMSTLDQLYAKAEERRTQGALNYAGALLPVEAFELLQLDPSARLVDVRTRAEL DWVGRPLVGDGQYLHVEWTRYPGGVPNAEFVNELKAALPADTPILFLCRSAARSKLAAVASAHAGFTKAFDLLEGFEGGK DGEGHRKTVDGWCFRKLPWIGA >Mature_182_residues MRGRLRAHRRGGGALECSFDRTIRRPPAMSTLDQLYAKAEERRTQGALNYAGALLPVEAFELLQLDPSARLVDVRTRAEL DWVGRPLVGDGQYLHVEWTRYPGGVPNAEFVNELKAALPADTPILFLCRSAARSKLAAVASAHAGFTKAFDLLEGFEGGK DGEGHRKTVDGWCFRKLPWIGA
Specific function: Unknown
COG id: COG0607
COG function: function code P; Rhodanese-related sulfurtransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20046; Mature: 20046
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGRLRAHRRGGGALECSFDRTIRRPPAMSTLDQLYAKAEERRTQGALNYAGALLPVEAF CCCCCCHHCCCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHH ELLQLDPSARLVDVRTRAELDWVGRPLVGDGQYLHVEWTRYPGGVPNAEFVNELKAALPA HHHHCCCCCEEEEEHHCCCHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCC DTPILFLCRSAARSKLAAVASAHAGFTKAFDLLEGFEGGKDGEGHRKTVDGWCFRKLPWI CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCC GA CC >Mature Secondary Structure MRGRLRAHRRGGGALECSFDRTIRRPPAMSTLDQLYAKAEERRTQGALNYAGALLPVEAF CCCCCCHHCCCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHH ELLQLDPSARLVDVRTRAELDWVGRPLVGDGQYLHVEWTRYPGGVPNAEFVNELKAALPA HHHHCCCCCEEEEEHHCCCHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHCCC DTPILFLCRSAARSKLAAVASAHAGFTKAFDLLEGFEGGKDGEGHRKTVDGWCFRKLPWI CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCC GA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA