| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351900
Identifier: 115351900
GI number: 115351900
Start: 2032915
End: 2033649
Strand: Direct
Name: 115351900
Synonym: Bamb_1849
Alternate gene names: NA
Gene position: 2032915-2033649 (Clockwise)
Preceding gene: 115351899
Following gene: 115351902
Centisome position: 57.16
GC content: 55.78
Gene sequence:
>735_bases ATGGAAATAGTTGCGCAATTTCGTAGCCCTGCCGATTTCGCTCCGCTTGGCGATTTTGCTGCTCATCTGGTCCGTCTATG GCCGGTGGTTGAGGCCATGTCACGCGAGGACGAGCGTCTAGGCCAGTGGTGGCTGAAGGCGGATACAGAGGAAGAAGCCC GTCTGTATCCCATGTATGAAGCGCCCGGCATACCTTCGACAGCCGTTTTGGCAGTGTTGGCGCAACGGTACGCAAAAAAG ATGGACCTTCCTAAAGTATTTGGCTTCTGGAATGGTCAAATGGACGCGGCCAACAGCGCGAGGCTGAAGTTGGCCATCGA TGCGAAGAGACGGCCCAGCGAGGTAGAAATTGGGCTACCTGCACAGAGCGCAGTCTCGACGGACGAGCGCAGCTATGAGG GCATGGCTAAGATAGTGTCCGCGATGGTCACGGTTTATGACCCGATGTATGTCTCTGTTTCACCACGAGAATATTTTCCG CGGCAGGTGTTTGATGACAAGCCGGGCGTTGGCTGGATGCTATATCTCCCGAAGCCGCTCACGGCTCAGCAAGTTCCGGA AGCACGCGAATTGATTCCAGTTCCCGAAGCCGGTCGGAAGCAGACCGGGACGATCATTGTGAGCGTCCCAGATGCCGTTT TTTCAGTGGACAACCCAGAACACGTCGAGATTGCCAACCGTATCGAGATTCGACTCGTCGACCAGGACCTTCTGCCCGCG TTCGCTGACCTGTAA
Upstream 100 bases:
>100_bases CGAGGTTGAAATGGTATTTTCAGACGGAGCGGACTTGGAAGTACATGAGAACGCCGCTTGCCCGTCTTAGCGTTGAATCA GAATGGGTGCCCTGACAAAC
Downstream 100 bases:
>100_bases GCACGATGCCGGCGCGATAATCCGCGCCGGCATTCTCAGTTAGAATAGCCCCACAGGCTGCGCAGCGTCGTCCCAGCTAT AAATAATCAGCTCGTTGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MEIVAQFRSPADFAPLGDFAAHLVRLWPVVEAMSREDERLGQWWLKADTEEEARLYPMYEAPGIPSTAVLAVLAQRYAKK MDLPKVFGFWNGQMDAANSARLKLAIDAKRRPSEVEIGLPAQSAVSTDERSYEGMAKIVSAMVTVYDPMYVSVSPREYFP RQVFDDKPGVGWMLYLPKPLTAQQVPEARELIPVPEAGRKQTGTIIVSVPDAVFSVDNPEHVEIANRIEIRLVDQDLLPA FADL
Sequences:
>Translated_244_residues MEIVAQFRSPADFAPLGDFAAHLVRLWPVVEAMSREDERLGQWWLKADTEEEARLYPMYEAPGIPSTAVLAVLAQRYAKK MDLPKVFGFWNGQMDAANSARLKLAIDAKRRPSEVEIGLPAQSAVSTDERSYEGMAKIVSAMVTVYDPMYVSVSPREYFP RQVFDDKPGVGWMLYLPKPLTAQQVPEARELIPVPEAGRKQTGTIIVSVPDAVFSVDNPEHVEIANRIEIRLVDQDLLPA FADL >Mature_244_residues MEIVAQFRSPADFAPLGDFAAHLVRLWPVVEAMSREDERLGQWWLKADTEEEARLYPMYEAPGIPSTAVLAVLAQRYAKK MDLPKVFGFWNGQMDAANSARLKLAIDAKRRPSEVEIGLPAQSAVSTDERSYEGMAKIVSAMVTVYDPMYVSVSPREYFP RQVFDDKPGVGWMLYLPKPLTAQQVPEARELIPVPEAGRKQTGTIIVSVPDAVFSVDNPEHVEIANRIEIRLVDQDLLPA FADL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27303; Mature: 27303
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIVAQFRSPADFAPLGDFAAHLVRLWPVVEAMSREDERLGQWWLKADTEEEARLYPMYE CCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEC APGIPSTAVLAVLAQRYAKKMDLPKVFGFWNGQMDAANSARLKLAIDAKRRPSEVEIGLP CCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEECCC AQSAVSTDERSYEGMAKIVSAMVTVYDPMYVSVSPREYFPRQVFDDKPGVGWMLYLPKPL CHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCHHHCCCCCCCEEEEEECCCC TAQQVPEARELIPVPEAGRKQTGTIIVSVPDAVFSVDNPEHVEIANRIEIRLVDQDLLPA CHHHCCCHHHCCCCCCCCCCCCCEEEEECCHHEEECCCCCCEEEECEEEEEEECHHHHHH FADL HHCC >Mature Secondary Structure MEIVAQFRSPADFAPLGDFAAHLVRLWPVVEAMSREDERLGQWWLKADTEEEARLYPMYE CCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEEEC APGIPSTAVLAVLAQRYAKKMDLPKVFGFWNGQMDAANSARLKLAIDAKRRPSEVEIGLP CCCCCHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEECCC AQSAVSTDERSYEGMAKIVSAMVTVYDPMYVSVSPREYFPRQVFDDKPGVGWMLYLPKPL CHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCHHHCCCCCCCEEEEEECCCC TAQQVPEARELIPVPEAGRKQTGTIIVSVPDAVFSVDNPEHVEIANRIEIRLVDQDLLPA CHHHCCCHHHCCCCCCCCCCCCCEEEEECCHHEEECCCCCCEEEECEEEEEEECHHHHHH FADL HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA